Protein

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Genbank accession
YP_010670402.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,87
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDSSDAIDNRGNSALRPFKTLQRALLEVARFSYRVGLSNDEFDAFSIYLYPSEYVVDNRPGEILYTEVPPLDANSNFDLTSSNNVLYKYNSIEGGIIIPRGCSIIGSDLRRTKIIPKYVPYPTTRPALGITAANEPARTAVFRVTGGCYFWQFSFFDGDQTGVYYKENDASTIQPTYSHHKLTAFEFADGRNPLSQLLADGTVVPNFDINTSTIPDIQSRTDLEIYYQKISRGFTTIPDTSGIPDQDQIQPRIEENRIVGPISDEYQVLQITRNGQTATALTVDELGNPVNHGFSVGVSINISGVTGSSGTQSELDATLYNGSFTVTSAQGNVFTYQMSDEPTGNAVGTNILVKVEIDTVDSASPYIFNLSLRSVWGMNGMHADGSKTTGFKSMVVAQFTGLSLQKDDRAFVRYNTGTGAYDEGGQGAHLDGSTRYKKGWRHCHVKASNDAFIQVVSVFAVGYGDHFFADSGADMSITNSNSNFGNTALRCKGFKTEAFTKDKFGTLTHIIPPKSLADVDEISINWVNLDIQRIRAIANPNRLYIYGYANEESPPIAKAQGYTIGARQDGTGGSAIPDKLYCLLKASQGAAATTTEASIQPYGPDVALAEVNTSASPLKFDSSTYTVQGQTVTGGWYLQVNATNNSLYAAITGNIDYATVSFTPTTFIKRVPDARVLTDRIYRLRYVVDKDSFPIPREPITGYVIQPRSSEVSSPQYTDVYYIYEIEQYQEFERGVSDGIYYLSFLYASVTPSTSNFDDFKFSQNVNEVYPAFDRDNPNADPAAAVSVADNVIIGLVSSTDGASPTPNEDKKRSITKEATEKFLDEANNNLSWNSSTGVLGTYTLTARLGDIETRKIPLKVDSEGAVVPIPVELRRHSIQRSGNHTFEYTGFGPGNYSTAFPQAQVEVLTFEQVRLSQSLKEAAGVSFYSGLNSNGDLFIGNQIINPVTGQITSSDIAQLNVIGEENTTVQTFSELVLTDKLTVLGGASNQLESIFSGPVTFQQKLTSELNVQVKKLTYANPDGTILKATLMAPEGTGGQPDLTGITTYTTPGDGDIVYNTDWVPGSNLGWMYYNQSWVKFGLTNTGIFNIADFGSDTHLGLGGAAESGYQLTVYEDVHITGDLVVDGAGGLGAGKYNVRTYTGDGTTQTFAISSGHSENSILVSINGVLQVPAVNYSVSGTNLVFGSGDAPRNGDILQVRELPI
Physico‐chemical
properties
protein length:1229 AA
molecular weight: 133571,64080 Da
isoelectric point:4,82315
aromaticity:0,10090
hydropathy:-0,26469

Domains

Domains [InterPro]
DC_0066
STR
1–1227
DC_0066
IPR023366
STR
294–377
IPR023366
YP_010670402.1
1 1229
Architecture
STR
STR 1-1227 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010670402.1
1 1229
Domain Start End Length (AA) Confidence
N-terminal 1 90 90 0,9704
Central domain 91 303 214 0,9242
C-terminal 304 1229 925 0,0365
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-90
Central
91-303
C-terminal
304-1229

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H38
[NCBI] 		2783673 Uroviricota > Caudoviricetes > Pantevenvirales > Yellowseavirus > Yellowseavirus thirtyeight
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010670402.1 [NCBI]
Genbank nucleotide accession
NC_070964.1 [NCBI]
CDS location
range 54647 -> 58336
strand +
CDS
ATGGCGTTAACAAGACTCAAGAATATTATTACGTCCCGTACAGGACGTATCATTTATGTGAACCCTGACGATTTCGATTCCTCTGATGCTATTGACAACAGAGGAAACTCGGCACTTAGACCTTTTAAGACCTTGCAAAGAGCATTGCTTGAAGTTGCTAGGTTCTCTTATCGTGTCGGTCTGAGTAATGACGAATTCGACGCATTCAGCATTTATCTATATCCCTCAGAATATGTTGTAGATAACAGACCAGGTGAGATTCTTTATACTGAAGTTCCCCCTCTTGACGCCAACTCAAACTTTGATCTAACCTCATCTAACAACGTTCTTTATAAGTACAACTCTATTGAAGGTGGTATCATCATCCCTAGAGGTTGTTCGATCATTGGTTCTGACCTCAGAAGAACCAAGATCATTCCTAAGTATGTTCCCTATCCTACAACCAGACCTGCTCTAGGTATCACTGCTGCTAACGAACCTGCAAGAACTGCTGTCTTCAGAGTTACTGGTGGTTGCTACTTCTGGCAGTTCTCATTCTTTGATGGTGATCAGACTGGTGTCTACTATAAAGAGAATGATGCTAGTACAATTCAACCAACATATTCTCACCACAAACTAACAGCATTTGAGTTTGCTGATGGTAGAAATCCACTATCACAACTCCTAGCAGATGGAACTGTTGTTCCTAACTTTGACATCAACACCTCTACAATTCCTGACATTCAGTCAAGAACTGACCTAGAGATTTATTATCAGAAGATCTCCAGAGGTTTCACCACAATTCCTGATACTTCAGGTATTCCCGATCAGGACCAGATTCAACCTAGAATCGAAGAAAACAGAATTGTTGGTCCTATCTCTGACGAATATCAGGTTCTACAAATTACAAGAAACGGACAGACTGCAACTGCACTAACTGTTGACGAACTAGGCAACCCAGTTAATCACGGTTTCTCTGTTGGTGTTTCTATTAACATTTCTGGTGTCACTGGTTCATCTGGTACTCAGTCAGAACTAGATGCTACTCTATACAATGGTTCCTTCACAGTTACTTCTGCACAAGGAAACGTATTTACCTATCAGATGTCAGACGAACCAACAGGTAATGCTGTTGGTACAAACATCCTGGTTAAAGTTGAGATTGATACTGTTGACTCTGCATCACCATATATCTTCAACCTATCACTAAGATCGGTGTGGGGTATGAACGGTATGCACGCTGATGGTAGCAAAACCACTGGTTTCAAATCGATGGTTGTTGCACAGTTTACGGGTCTATCTCTACAGAAAGATGACCGTGCATTTGTTAGATATAACACTGGTACTGGTGCATACGATGAAGGCGGTCAAGGTGCTCACCTAGATGGTTCTACACGATATAAGAAAGGGTGGAGACATTGCCACGTTAAGGCATCAAACGACGCATTTATTCAGGTCGTTTCGGTGTTCGCTGTGGGTTATGGCGATCACTTCTTTGCAGATAGTGGCGCTGACATGTCGATCACTAACTCCAACTCTAACTTCGGTAATACTGCTCTCAGATGTAAAGGATTTAAGACTGAGGCATTTACCAAGGATAAGTTTGGTACTCTAACTCACATCATTCCTCCCAAGTCTCTTGCTGATGTTGATGAGATCTCGATCAACTGGGTCAACCTTGACATTCAAAGAATCAGAGCAATCGCTAACCCCAATAGATTGTATATCTATGGTTATGCAAATGAGGAATCACCACCAATCGCAAAGGCACAAGGTTATACAATCGGTGCAAGACAAGATGGTACTGGAGGAAGTGCAATTCCCGACAAACTATATTGTTTGTTGAAGGCAAGTCAGGGTGCTGCTGCAACAACAACTGAGGCATCAATTCAACCTTATGGTCCTGATGTTGCACTAGCAGAGGTTAATACTTCTGCAAGTCCCCTGAAGTTTGACTCTTCTACTTACACAGTTCAAGGTCAAACTGTCACTGGTGGATGGTATCTACAAGTGAACGCAACAAACAACTCTCTGTATGCTGCTATTACAGGAAACATTGATTATGCAACAGTTTCATTCACACCAACTACATTCATCAAGCGTGTTCCTGATGCTCGTGTTCTAACTGATAGAATCTACAGACTACGCTATGTTGTTGATAAGGATTCATTCCCAATCCCAAGAGAACCTATTACTGGTTATGTTATCCAACCTAGATCTTCTGAAGTAAGTTCACCACAATACACAGATGTTTACTACATCTATGAGATTGAACAGTATCAAGAATTTGAACGTGGTGTTTCTGATGGTATCTATTATCTCAGTTTCCTCTATGCATCTGTTACTCCATCAACATCTAACTTCGATGACTTTAAGTTCTCACAGAACGTGAACGAAGTTTATCCTGCATTTGACAGAGATAATCCTAATGCAGACCCTGCTGCAGCAGTATCTGTTGCTGATAACGTTATCATTGGTCTGGTTTCTTCTACTGATGGTGCATCACCAACTCCTAATGAAGACAAGAAGAGAAGTATTACTAAGGAAGCAACAGAGAAGTTCCTTGATGAAGCAAACAACAACCTATCTTGGAACTCATCAACTGGTGTCCTTGGCACATATACTCTGACTGCAAGACTTGGTGATATTGAAACCAGAAAGATTCCTCTGAAGGTTGACTCTGAGGGTGCTGTTGTTCCTATTCCTGTTGAACTCAGAAGACACTCGATTCAAAGATCTGGTAATCACACGTTTGAATACACTGGTTTTGGTCCTGGTAACTATTCAACTGCATTCCCTCAGGCACAGGTTGAAGTTCTAACTTTTGAACAGGTTAGATTGTCTCAGTCGCTAAAAGAAGCAGCAGGTGTTTCATTCTATTCTGGTCTAAACTCCAACGGTGATCTATTCATCGGAAACCAGATCATCAACCCAGTTACTGGTCAGATTACCAGTAGTGATATTGCACAGTTGAATGTTATCGGTGAAGAGAACACTACAGTTCAGACATTCTCTGAACTTGTTCTTACTGACAAACTAACTGTTCTTGGTGGTGCATCTAACCAGTTGGAATCTATCTTCTCTGGTCCTGTTACTTTCCAGCAGAAACTAACATCTGAACTCAATGTTCAGGTTAAGAAACTAACTTATGCTAACCCTGACGGTACAATCCTGAAGGCGACATTGATGGCACCTGAAGGTACTGGTGGTCAACCAGATCTAACAGGCATTACGACATATACCACACCTGGTGATGGTGATATTGTCTACAACACTGATTGGGTTCCTGGTTCAAACCTAGGTTGGATGTATTACAACCAGTCATGGGTGAAGTTTGGTCTAACTAACACTGGCATCTTTAACATTGCAGACTTTGGTAGTGATACCCACCTTGGTTTGGGTGGTGCTGCTGAGTCTGGTTATCAACTAACTGTATATGAAGACGTACATATTACTGGCGATTTGGTTGTTGATGGTGCTGGTGGTCTCGGTGCTGGCAAGTATAATGTACGCACATATACTGGTGATGGTACTACACAGACATTTGCTATTTCTAGTGGACACAGTGAAAATAGTATTCTAGTTTCAATCAATGGTGTCCTACAAGTTCCTGCGGTGAACTATTCTGTTTCTGGAACAAACCTTGTGTTTGGTTCAGGTGATGCTCCTCGTAATGGTGATATTCTCCAAGTTAGAGAACTGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d230544f51b689f5a85b420a0a805220e3c1fe46edfc3bb85e1107b22152f72d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3570
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H38 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank