Protein

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Genbank accession
XYR93612.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MTILQTLYPIPDNVPRLDATGVQTFANTVRFGRVLAGTSVAEESGFGLITTNAKVTGYLNVALAATLTSTSNVFGGFSVAGNAIFGGSSLQIVGDGNIYLTFRTTSNQTDTQLITDRGAKGFIIRNWVTLGTGSYTDFSLNAATGALKWGAQDIYHSGTFNWKTFAVKDDRNRFSILDLASYVSWGTLRFLDPADLSATGLRYYVTTDTTSWALNTANDDGNWRRTRFRVPRDSASPVQIDGGAAWFAGNLPSPADTTKAAIIESSSFAWEFRAAPVPQEVNSWQWGPFVLRGYDSAGNNVRSFARRAEAGTDASSIATGLRSQLGGVNRAWIEWYLNSFRICGADGTISASFSDSAIWLQKPLTFSSTALFNGVATFSSVISSRTGTPNTQMIFHSIGWNNGVQRWAQVMEATGAYVWYCYNATGGNPTSVLSMTNPANGLGGNNPGIGVAGSIYVTQGIIAPNWGFTTNDANKASFIATGSYGGGFMCQDNAGAGIYYGGMYAASGWVGIGLTAANSVGLNKILRLTQEQYMTVQTEGGFAARGGSAVMVVEERSSTNVQFHMYATGGAWRVWDNVTGADNLTCYRTTGDLYIRSWGYAANFAINSDRRIKTWISDLDPEEELDKVVTLVPRLYLKDNKLESGVYAQDVQERWAHMVTVSESNPYGIDGLLTVAHTMLHAPLVASIQALHARIEKLQARLQELEPR
Physico‐chemical
properties
protein length:708 AA
molecular weight: 76512,55580 Da
isoelectric point:6,21667
aromaticity:0,11299
hydropathy:-0,11427

Domains

Domains [InterPro]
DC_0643
STR
5–708
DC_0643
IPR030392
CHP
608–653
IPR030392 Coil
IPR030392
CHP
608–702
IPR030392
XYR93612.1
1 708
Architecture
STR
STR 5-708
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYR93612.1
1 708
Domain Start End Length (AA) Confidence
N-terminal 1 480 480 0,0491
Central domain 481 679 200 0,1304
C-terminal 680 708 28 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-480
Central
481-679
C-terminal
680-708

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage PhiXhv-16
[NCBI] 		3447918 Viruses > unclassified bacterial viruses >
Host Xanthomonas hortorum pv. vitians
[NCBI] 		83224 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas hortorum

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYR93612.1 [NCBI]
Genbank nucleotide accession
PV764603 [NCBI]
CDS location
range 204496 -> 206622
strand +
CDS
ATGACGATTCTCCAGACTCTGTATCCCATCCCCGATAATGTTCCACGTCTGGACGCAACTGGCGTGCAGACTTTTGCCAACACGGTTCGTTTCGGTCGAGTGCTAGCAGGAACTAGCGTGGCGGAAGAATCGGGCTTCGGCCTAATCACCACCAACGCCAAGGTCACAGGCTATCTTAACGTAGCCTTAGCCGCCACACTGACCAGCACGTCTAACGTGTTCGGTGGCTTCTCGGTCGCAGGTAACGCAATCTTTGGTGGCAGCAGCTTGCAGATCGTTGGTGATGGCAACATTTATCTGACCTTCCGCACTACCTCGAACCAAACGGACACTCAGTTAATTACGGACCGGGGTGCTAAGGGTTTCATCATCCGTAATTGGGTGACTCTTGGTACTGGTTCGTACACCGACTTCTCATTGAATGCGGCAACGGGTGCTCTCAAGTGGGGCGCGCAGGATATTTACCACTCGGGTACCTTTAACTGGAAAACCTTCGCGGTCAAAGATGATCGAAACCGCTTCTCCATTCTAGACCTAGCCTCTTACGTTAGTTGGGGTACTCTCCGATTCCTTGACCCTGCTGACCTGTCAGCCACTGGCCTTCGCTATTACGTAACTACCGATACTACCTCGTGGGCTTTGAACACTGCGAATGATGATGGGAACTGGCGACGCACTCGTTTTCGCGTTCCCCGAGATAGTGCCTCACCTGTGCAAATCGACGGCGGAGCTGCTTGGTTCGCTGGGAATCTTCCGTCTCCTGCTGATACGACCAAGGCTGCCATCATTGAAAGCAGCAGCTTCGCTTGGGAATTCCGCGCTGCTCCTGTACCCCAGGAAGTTAACAGTTGGCAGTGGGGCCCCTTCGTACTGCGAGGTTATGACTCCGCGGGCAATAACGTGCGTTCGTTTGCACGACGGGCGGAGGCGGGTACGGATGCGTCTTCCATCGCTACGGGTCTTCGGAGTCAGCTAGGTGGTGTCAATCGTGCATGGATTGAGTGGTATCTCAATTCCTTCCGTATCTGTGGTGCTGATGGTACGATTTCGGCTTCTTTTAGCGACTCTGCCATCTGGCTACAGAAGCCGCTTACTTTCAGTTCTACTGCGCTGTTCAACGGCGTGGCCACCTTCTCCTCCGTCATAAGTTCACGCACCGGCACTCCTAATACTCAAATGATTTTCCACTCGATCGGGTGGAATAATGGTGTGCAGCGTTGGGCGCAGGTGATGGAAGCGACGGGTGCTTATGTGTGGTACTGCTACAATGCCACTGGCGGTAATCCTACTTCTGTGTTGTCGATGACTAACCCCGCCAACGGGCTCGGGGGCAATAACCCCGGCATCGGCGTGGCAGGTTCGATCTATGTAACCCAAGGCATCATTGCGCCTAACTGGGGCTTCACTACCAACGATGCCAACAAGGCGTCGTTCATCGCTACCGGTAGTTACGGTGGTGGTTTCATGTGTCAAGATAACGCAGGTGCTGGTATCTACTACGGAGGTATGTATGCTGCAAGCGGCTGGGTCGGTATTGGCCTAACCGCTGCCAACTCGGTTGGCCTTAACAAGATTCTACGACTTACGCAAGAACAGTACATGACGGTACAGACTGAAGGTGGCTTCGCCGCCCGAGGTGGCTCCGCTGTCATGGTTGTAGAGGAGCGCAGTAGCACCAACGTGCAGTTCCATATGTACGCTACAGGTGGTGCGTGGCGTGTTTGGGATAACGTTACCGGTGCCGACAACCTCACTTGCTATCGGACTACTGGTGACTTGTACATCCGTAGTTGGGGTTACGCTGCCAACTTTGCCATCAACTCAGATCGTAGAATCAAGACGTGGATTTCTGATCTGGACCCCGAGGAAGAACTGGACAAGGTGGTGACGCTGGTTCCACGCCTGTACCTCAAGGACAACAAGCTGGAATCTGGCGTGTACGCGCAGGACGTGCAGGAACGGTGGGCCCACATGGTTACCGTGAGCGAGTCAAATCCCTATGGCATTGACGGACTCCTGACTGTGGCCCACACCATGCTACACGCTCCACTGGTTGCGTCCATCCAAGCCTTGCACGCTCGCATCGAAAAGCTGCAAGCCCGACTGCAAGAGCTTGAACCCCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4178fa6a4f20ddd80129a514aaddbb231029f60a8b3d92c2280dcb1e48b18c8d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3656
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50