Protein

View in Explore
Genbank accession
URQ09040.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFAQPKGSTSKESNKDSIARKFGCKKSEVVYAKSGQSLSGYKVIYDKVSQRAYALPSNIGAVTVTSLVDGILTHSGGTVDLGELAVSRREFDTVQGDFTSGVILKVKNEVIAYSHSRYRWNGTFPKVVDPDSVPNSVDWINVDANPALSELAKSVGASLIGYKPTGTTTTTGTVKGKLDGFIDFANDYCGGPITGQPDLTSQLQQAIIDAFNSGVGDIKIVGDFYISDMILWYPGVRLLGGRYDTTLIRASNTFPVGGTMLRSYRPPLWNAGCHGLALENIYFVGRSAKDLHAVDINDASYFNLEGVRYDLFNKALSFNRWIDETRVDTGGTITYPNAHSVEMGGQSYFGTVTRCYAGSCVTCVDFNGVVNRCTFTSNTWTSSDLAYNFSNPRGVYETNTFITCNIEGVKVVWEWFFSINSPYHNVWINTSIDNGNPDITCLAKDGGRQTFVGLAIFPYGNPSLVNWYNINPNGHRSTVLGTDLGESLPEDQLKTQVREELHTLTGIANKQWAGQQVTETIPAGGYKAINISIPGLKGNSAVIASLSAIYAGVSVSAASNNTGIVAVIINNHSASPVEINAYLSVTGIAKSFL
Physico‐chemical
properties
protein length:596 AA
molecular weight: 64416,51350 Da
isoelectric point:6,16694
aromaticity:0,10235
hydropathy:-0,12466

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_1937
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
90–139
IPR040775
URQ09040.1
1 596
Architecture
ATT
RBD
ATT 1-155 | RBD 435-595 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ09040.1
1 596
Domain Start End Length (AA) Confidence
N-terminal 1 203 203 0,9936
Central domain 204 486 284 0,9915
C-terminal 487 596 109 0,9698
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-203
Central
204-486
C-terminal
487-596

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage BRM 13314
[NCBI] 		2654656 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ09040.1 [NCBI]
Genbank nucleotide accession
ON169963.1 [NCBI]
CDS location
range 88155 -> 89945
strand +
CDS
ATGAATCCGCAATTTGCTCAACCAAAAGGTTCTACTTCAAAAGAATCGAACAAAGATAGTATTGCCCGTAAATTTGGGTGTAAAAAGTCGGAAGTCGTTTATGCCAAATCAGGACAGTCCTTGTCTGGTTATAAAGTGATCTATGATAAGGTGTCTCAACGTGCCTACGCTCTCCCTTCTAACATTGGTGCTGTAACGGTCACCAGTTTAGTCGACGGCATCCTCACGCACTCTGGAGGAACTGTAGATTTGGGAGAACTGGCTGTTTCACGTCGTGAATTCGATACAGTTCAAGGTGATTTTACTTCTGGGGTTATCCTTAAAGTTAAAAATGAAGTCATCGCGTATAGTCATAGTCGATATCGTTGGAACGGCACTTTTCCGAAAGTTGTTGACCCAGATTCAGTACCAAATTCCGTAGATTGGATAAATGTGGATGCCAATCCAGCATTATCTGAATTGGCTAAATCAGTTGGGGCTTCATTAATTGGATATAAACCTACTGGAACAACGACTACCACAGGGACGGTTAAAGGCAAATTAGACGGATTTATAGATTTTGCTAATGATTATTGCGGTGGTCCTATCACTGGTCAACCAGATTTAACTTCTCAACTGCAACAAGCAATAATTGATGCATTTAATTCCGGTGTCGGTGATATTAAGATTGTTGGGGATTTTTATATCTCCGATATGATATTGTGGTATCCTGGGGTTCGATTGTTGGGCGGTAGATACGATACTACATTGATTCGAGCTTCTAATACTTTCCCTGTCGGTGGTACAATGTTGCGTTCATATCGCCCACCGTTATGGAATGCTGGTTGTCATGGACTGGCGCTAGAAAATATATATTTTGTTGGCCGGAGTGCTAAAGACTTGCACGCTGTGGATATCAATGATGCTTCATATTTTAATCTAGAAGGGGTGCGTTATGATTTATTCAATAAAGCACTTTCATTCAATAGATGGATAGATGAAACTCGTGTTGATACTGGTGGGACTATCACGTACCCAAATGCTCATAGTGTTGAAATGGGTGGGCAATCTTATTTTGGTACTGTAACCCGTTGCTATGCAGGTAGTTGCGTCACTTGCGTAGATTTTAATGGGGTTGTGAATCGTTGCACATTCACAAGCAACACTTGGACGTCCAGTGATTTGGCATATAACTTCAGTAATCCTCGTGGTGTTTATGAAACCAACACATTTATCACCTGTAATATTGAGGGTGTGAAGGTTGTTTGGGAATGGTTTTTCTCGATAAACTCCCCATATCATAATGTTTGGATAAATACCAGTATAGACAATGGTAATCCTGATATCACATGCCTCGCTAAAGATGGAGGTAGACAGACTTTTGTTGGGTTGGCAATTTTCCCTTATGGGAATCCGAGTTTGGTTAACTGGTATAATATAAATCCAAATGGTCATCGCAGTACCGTTCTTGGTACAGATTTGGGGGAATCGTTGCCGGAAGATCAATTGAAAACCCAAGTGCGCGAGGAATTACACACATTAACGGGTATTGCTAATAAACAATGGGCAGGACAGCAAGTTACTGAAACTATCCCAGCAGGTGGATATAAAGCTATCAATATCAGTATTCCTGGTTTAAAAGGAAATTCCGCTGTGATCGCTTCTTTATCAGCAATATATGCTGGCGTTTCTGTGAGCGCAGCCAGTAATAATACTGGGATTGTGGCTGTTATTATAAACAACCATTCGGCATCTCCTGTTGAAATAAACGCATATCTCAGTGTCACAGGCATAGCCAAAAGTTTCTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e246bdf11be6cffd5694bc2039dfc119688cc323b5997d934581b403af34d3cc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, comparative genomic analysis and efficiency of wild-type bacteriophages on the reduction of Salmonella Heidelberg colonization in broiler chickens Vaz,C.S.L., da Fonseca,F.N., Voss-Rech,D., Mores,M.A.Z., Coldebella,A. and Cantao,M.E. 2024-05 — GenBank