Protein

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Genbank accession
YP_007003104.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,54
Protein sequence
MALRRDVTYSGRFTPATTERPQGGFKNRTSPTSEDGSYLEEQWLNDIDGFFASALMDAGVVPNGNVDEGGNSQLYDAVLRTREVTPLNDSWNGFFTRAHITQLPSPAGVPATSGSGGTAYSADDEWSIGNFASGGTISLDDDGLIFSQGIYKLFTFTAEQLSIIDVTKVPVYIVGQDGSRHFVKHNGTGVVVTKPDTTTLKVQVNNAILAELGITKVFSFFVTATVGFVQEKGDLALPSSLGFFEIEGLPQENGFIITNMVIGGNRVIIQNVTFGPITNGGSANVPWITPFPNAVFNCVASPLGLGSNAASSSMATGNPTVNGVNVYNWGAIQAKVRIFAIGY
Physico‐chemical
properties
protein length:343 AA
molecular weight: 36428,30840 Da
isoelectric point:4,75438
aromaticity:0,10204
hydropathy:0,00233

Domains

Domains [InterPro]
DC_0226
STR
1–342
DC_0226
G3DSA:2.60.40.3940
RBD
250–343
G3DSA:2.60.40.3940
YP_007003104.1
1 343
Architecture
STR
STR 1-343
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007003104.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9106
Central domain 140 332 194 0,0797
C-terminal 333 343 10 0,9978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-332
C-terminal
333-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CP-T1
[NCBI] 		10689 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007003104.1 [NCBI]
Genbank nucleotide accession
NC_019457.1 [NCBI]
CDS location
range 41110 -> 42141
strand +
CDS
ATGGCTTTAAGACGCGACGTTACATACTCGGGGCGGTTCACGCCGGCAACTACAGAGCGCCCTCAAGGTGGGTTTAAAAATCGCACGTCACCTACTTCGGAGGATGGATCATATCTTGAGGAGCAATGGCTCAACGATATTGATGGATTCTTCGCTTCAGCATTGATGGACGCTGGGGTTGTCCCTAACGGTAATGTTGATGAAGGCGGTAATTCTCAATTGTATGATGCAGTTCTGAGAACCCGAGAAGTTACTCCGCTAAACGATAGTTGGAATGGTTTCTTCACGCGAGCTCACATCACACAACTACCATCACCTGCAGGAGTGCCAGCTACTAGCGGATCTGGCGGTACGGCATACAGCGCAGATGATGAATGGTCGATCGGTAACTTCGCAAGCGGGGGTACTATTTCGCTTGATGACGACGGTCTTATATTTTCTCAAGGTATCTACAAGCTATTTACGTTCACTGCTGAGCAGTTGTCGATTATCGATGTTACCAAAGTTCCGGTCTATATCGTTGGTCAAGATGGTTCGCGGCACTTTGTTAAACACAACGGAACGGGTGTGGTTGTCACAAAGCCAGATACCACAACTCTAAAAGTGCAGGTTAACAATGCAATTCTTGCCGAGCTTGGTATTACGAAAGTGTTTAGTTTTTTTGTAACTGCTACGGTTGGTTTCGTTCAAGAAAAAGGTGATCTTGCTCTACCGTCTTCGCTTGGATTTTTTGAGATCGAGGGTCTTCCTCAAGAAAACGGCTTTATCATCACAAATATGGTTATTGGGGGGAATAGGGTAATCATACAAAACGTAACCTTCGGCCCAATTACCAATGGGGGCAGTGCAAATGTACCATGGATTACCCCGTTCCCTAATGCGGTTTTCAACTGCGTAGCTTCACCACTGGGTCTGGGATCAAACGCGGCCTCTTCGTCGATGGCCACAGGTAACCCTACTGTTAATGGAGTTAACGTATACAACTGGGGTGCAATACAAGCTAAAGTAAGAATATTTGCGATAGGTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4482542941884fbdac45c00e296a2da165267c3c4bfe3da01ff3462ec757c0f3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6244
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50