Protein

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Genbank accession

XCO56074.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,55

Protein sequence

MGSTLTTIGRSKLASATPENQLNVTEIAVGDGDGGYPPISPSTTSLANEVWRGNASLPIRTDDDLVIIFEGSIPANIGGFVVREVGIFDDAGDLIAIGTTSEIEKPDLSSGSSVALTVRLHVLLDNASQVTLMFNDTTTIDHAGLGNRSAADSHPASAISTDALPDIGANAESDVQAVLALLKSGAIKRHQSSLSDSTDDRLLLTGAFGLGGEAIVSSDWNAITKSGFYTNDNNSQSELPGPYNTMMMIHINKGSNATQICMRSSLDDPRTWRRSRSLSGGQDVWGAWVEIQSDGYREISNANLAVKSGFYSLPFSSGNNAPIENSGTLIVVQGGQNQNYISQTFIQSNENDEERIFVRHKKLIDWTSWVELHHSGNSDEVGFIKYAITTVTPTGRYIKANGAAVSRTAYADLFAKVGTFWGPGDGSTTFNVPDLRGEFIRTWDDGRGVDSGRSFGTFQADEFKSHTHNVQTYGGNTANNGNFIDSCDEASLAGSDNDAALATGGSETRPRNVSLIAWIRY

Physico‐chemical properties

protein length:	521 AA
molecular weight:	55681,53680 Da
isoelectric point:	4,76324
aromaticity:	0,07678
hydropathy:	-0,31075

Domains

Domains [InterPro]

DC_1371
STR
1–395

DC_1371 SSF88874

IPR022225
ATT
3–139

IPR022225 cd19958 cd19958 IPR037053

IPR051934
Unmapped
4–138

IPR051934 SSF88874

IPR011083
ATT
384–440

IPR011083

XCO56074.1

1 521

Architecture

ATT

STR

ATT

STR

ATT 1-139 | STR 140-375 | ATT 376-440 | STR 441-521

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1371	STR	DC_1371	1	395	Novel HMM	DC_1371	Central	Low	Positional only	130 proteins / 130 hits
IPR022225	ATT	DC_0271	3	139	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
IPR051934	Unmapped	-	4	138	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
cd19958	STR	DC_0464	217	291	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	301	372	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR037053	ATT	IPR037053	376	436	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	381	521	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	384	440	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	395	521	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XCO56074.1

1 521

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	197	197	0,9731
Central domain	198	396	200	0,0095
C-terminal	397	521	124	0,9819

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-197

Central
198-396

C-terminal
397-521

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Vibrio phage vB_VpaM_R19R [NCBI]	3161148	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Vibrio sp. [NCBI]	678	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Genbank protein accession

XCO56074.1 [NCBI]

Genbank nucleotide accession

PP839371.1 [NCBI]

CDS location

range 19815 -> 21380
strand +

CDS

ATGGGATCTACATTAACTACAATAGGCAGGTCAAAGCTTGCCAGCGCAACACCAGAAAACCAGCTTAACGTTACCGAAATTGCAGTTGGTGACGGTGACGGAGGCTATCCACCAATTAGCCCTAGCACCACATCATTGGCCAATGAGGTTTGGCGCGGAAATGCATCATTACCAATCAGAACTGATGATGATTTAGTCATTATATTTGAGGGTTCGATTCCGGCTAATATAGGCGGCTTTGTTGTTCGAGAGGTTGGTATATTTGATGACGCTGGCGATCTAATCGCTATCGGTACAACCTCAGAAATAGAAAAGCCAGATCTTTCATCTGGATCATCTGTTGCACTAACAGTTCGTTTGCATGTTCTTTTGGATAATGCCAGCCAAGTCACTTTGATGTTTAACGACACAACGACAATTGATCACGCTGGATTAGGAAACAGAAGCGCAGCGGATTCTCACCCAGCATCTGCAATTAGCACAGACGCACTACCGGATATTGGAGCTAACGCAGAATCTGACGTTCAGGCAGTTCTTGCTCTTCTTAAATCTGGAGCGATAAAAAGGCATCAATCATCACTTTCAGATTCAACAGATGATAGGTTGTTACTTACCGGCGCGTTTGGTTTGGGCGGAGAGGCTATTGTAAGTAGCGATTGGAACGCGATAACTAAAAGCGGATTTTACACCAATGACAACAACTCTCAGAGTGAATTGCCTGGTCCGTATAACACCATGATGATGATCCACATAAATAAGGGTTCGAACGCCACTCAAATATGCATGAGGTCAAGTTTAGATGACCCTAGAACATGGAGGAGGTCTAGGAGCCTTTCAGGAGGTCAGGACGTTTGGGGGGCATGGGTTGAGATCCAAAGTGATGGATACAGAGAAATATCTAACGCGAACTTGGCAGTCAAGTCTGGTTTTTACAGTCTTCCTTTTTCTTCTGGAAATAATGCGCCAATAGAAAATAGCGGAACTCTTATTGTTGTTCAGGGCGGTCAAAACCAAAATTACATTAGCCAAACGTTTATCCAATCAAACGAGAATGATGAAGAGCGAATTTTTGTAAGACACAAAAAGTTAATCGATTGGACTTCTTGGGTAGAGCTTCATCACTCAGGAAATAGTGACGAAGTTGGTTTTATTAAATACGCAATTACAACCGTAACTCCAACAGGCCGTTACATTAAAGCAAATGGCGCTGCGGTAAGCAGAACAGCTTACGCCGATCTTTTTGCAAAAGTCGGAACATTCTGGGGTCCTGGTGATGGTTCAACTACATTTAACGTTCCAGATCTTCGTGGAGAATTCATTCGAACGTGGGACGATGGTCGCGGAGTGGATTCAGGGCGTTCTTTTGGTACATTTCAGGCTGATGAGTTCAAGTCTCATACCCACAATGTTCAAACTTATGGTGGTAACACAGCAAATAACGGCAATTTTATTGACAGTTGTGATGAAGCTTCACTTGCTGGAAGTGATAATGATGCAGCATTAGCAACAGGCGGTAGTGAAACAAGACCACGAAACGTATCCCTGATCGCTTGGATTAGATATTAA

Genome Context

Tertiary structure

PDB ID

0f838bf17969dce8b0f93be51f53a4da6399c6d1bdeb8cfa524ea4cf7b444637

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7795

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence