Protein

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Genbank accession
XPP57680.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANAYSSISLTTPIADIKAALIAKYGGGNVTVHYETTAYLIFGCTDIADKVIKIYWASSQLRIYYGDAWTSGSTITNEVQFAGHNLGTTSEIHLVLGTNLFYLALLSSSINSMVAIIAKMSNNDYICIGLIGTSTAAYNANSKGRNTTDATDLKFVTLNSKFTSSTGTLYKQNVIIVKSDGSAEVNGDGGLATIADLFNISHSLTVATLLKGTNYLMSPCNLYMADCLTYLPTCLFAEF
Physico‐chemical
properties
protein length:239 AA
molecular weight: 25582,84430 Da
isoelectric point:5,72587
aromaticity:0,10042
hydropathy:0,26485

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP57680.1
1 239
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0017
Central domain 11 209 200 0,0047
C-terminal 210 239 29 0,9937
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-239

Taxonomy

  Name Taxonomy ID Lineage
Phage Syntrophomonadaceae phage IMGVR 15540650
[NCBI] 		3403687 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Syntrophomonadaceae
[NCBI] 		68298 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP57680.1 [NCBI]
Genbank nucleotide accession
PV036453 [NCBI]
CDS location
range 18119 -> 18838
strand -
CDS
ATGGCTAATGCATATTCTTCAATCAGTTTAACCACGCCCATAGCTGACATAAAGGCAGCATTGATTGCTAAATATGGTGGGGGCAACGTTACAGTTCACTATGAGACTACGGCATATTTAATCTTTGGTTGTACCGACATTGCTGATAAGGTTATAAAAATTTACTGGGCATCATCTCAATTGCGAATTTATTATGGAGATGCATGGACTTCTGGAAGTACAATCACCAATGAGGTGCAATTTGCAGGCCATAATCTGGGCACTACCTCAGAAATACATTTGGTGTTAGGAACCAATCTTTTTTATCTAGCGTTACTAAGTTCTTCAATAAATTCTATGGTTGCTATAATTGCAAAAATGTCAAACAACGACTATATATGCATTGGTTTAATTGGTACCTCTACCGCTGCGTACAACGCCAATAGCAAGGGCAGGAATACCACAGATGCTACAGATTTAAAATTTGTTACTCTAAACAGTAAATTTACATCAAGCACAGGTACATTATACAAGCAAAACGTAATTATCGTAAAATCCGACGGATCGGCAGAGGTGAACGGGGATGGGGGCCTAGCAACAATCGCCGATTTATTTAATATTAGTCATTCTCTGACCGTAGCCACTCTATTGAAGGGAACAAACTATTTAATGAGCCCGTGCAATCTCTACATGGCCGATTGTTTAACTTATCTGCCAACCTGCCTATTTGCTGAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84ad85535ca9f21f88e56edf44b781beb0c9b3b9636dc0eaca644f2114fdb5ef
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5954
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phylogeny and disease associations of a widespread and ancient intestinal bacteriophage lineage de Jonge,P.A., van den Born,B.H., Zwinderman,A.H., Nieuwdorp,M., Dutilh,B.E. and Herrema,H. 2024 39068184 GenBank