Protein

View in Explore
Genbank accession
QDH45777.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MAGVTDLVGFLWNSASDKNFAISDETNQIASFEVDAVLSETHTLSRQVTDNKVENGSPVTDHIILNPVTLNIQAIVTDAPIKGIIEGAIDAVDNLLGGSKYTADCFGALWHLYEHKGYLTVYTQYKTYTNMVIENITIPRDPKDGEALVFNIDMKQIRIVESATTTLPPGIGAKKDGTSNAKGDAAKRATPNKDVGKNTGLEVEKDTGASIIKQAKDGGADVVSDIMKRVKGSIAELGLGR
Physico‐chemical
properties
protein length:241 AA
molecular weight: 25792,81390 Da
isoelectric point:5,14537
aromaticity:0,05394
hydropathy:-0,22158

Domains

Domains [InterPro]
DC_0628
STR
14–236
DC_0628
IPR048494
ATT
34–168
IPR048494
QDH45777.1
1 241
Architecture
STR
ATT
STR
STR 14-33 | ATT 34-168 | STR 169-236 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_PSKM
[NCBI] 		2588094 Uroviricota > Caudoviricetes > Dibbivirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH45777.1 [NCBI]
Genbank nucleotide accession
MK798144.1 [NCBI]
CDS location
range 16888 -> 17613
strand +
CDS
ATGGCAGGTGTAACTGATCTGGTAGGGTTCCTCTGGAACTCTGCCAGCGATAAGAATTTTGCTATCTCAGACGAGACGAATCAGATCGCCTCGTTTGAGGTTGACGCAGTGCTAAGTGAGACGCACACACTAAGCCGCCAGGTGACTGATAACAAGGTTGAGAACGGCTCGCCCGTAACTGACCACATTATCCTCAACCCGGTAACGCTCAACATTCAGGCCATTGTCACCGACGCGCCGATCAAGGGGATTATTGAAGGCGCTATTGACGCCGTAGATAACCTTCTGGGCGGCTCAAAGTACACGGCTGATTGCTTCGGTGCCTTGTGGCACCTTTACGAGCACAAAGGCTATCTGACCGTTTACACGCAGTACAAGACATACACAAACATGGTGATAGAGAACATCACGATCCCGCGAGATCCTAAAGACGGTGAAGCGCTGGTGTTCAACATCGACATGAAGCAGATCAGGATCGTTGAGAGCGCAACGACAACACTTCCGCCAGGGATCGGAGCGAAGAAGGACGGAACCAGCAACGCCAAAGGCGACGCTGCGAAGCGTGCAACGCCTAACAAGGATGTCGGCAAAAACACCGGCCTTGAGGTTGAAAAGGATACCGGGGCCAGCATCATTAAGCAGGCTAAGGACGGCGGGGCGGATGTGGTTTCTGATATCATGAAACGCGTTAAGGGTTCCATTGCTGAGTTGGGGTTAGGACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
07063eaca8b7e199643365aeb3eabe7e9bdd36ce4ef4a5ff15b55d962b813670
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7260
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea sp. infecting bacteriophage vB_PagM_PSKM Truncaite,L., Simoliuniene,M., Zajanckauskaite,A., Meskys,R. and Simoliunas,E. 2012-05 — GenBank