Protein

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Genbank accession
YP_007877904.1 [GenBank]
Protein name
OMP1 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRKFLPIVMLLMAAPAHADITHRLSSSVQLQVNSAATQATRLGNSYAISGNNVNTTDGTTTGAVATGDITSGIYSPGSIDATQATAGEAFSFSTSFTQADAIPTSAATTGEIQNFGIMTSNAAGSAGDLAGTIDSTGSMALTAGGAGTSAIGQFSSEIIIK
Physico‐chemical
properties
protein length:161 AA
molecular weight: 15985,50480 Da
isoelectric point:4,55510
aromaticity:0,04969
hydropathy:0,17516

Domains

Domains [InterPro]
IPR046285
STR
9–153
IPR046285
IPR046285
STR
20–153
IPR046285
YP_007877904.1
1 161
Architecture
STR
STR 9-153 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007877904.1
1 161
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,1420
Central domain 29 150 123 0,0337
C-terminal 151 161 10 0,9784
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-150
C-terminal
151-161

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn30
[NCBI] 		536474 Uroviricota > Caudoviricetes > Pantevenvirales > Leucotheavirus > Leucotheavirus syn30
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877904.1 [NCBI]
Genbank nucleotide accession
NC_021072 [NCBI]
CDS location
range 98328 -> 98813
strand +
CDS
ATGCGTAAGTTTTTACCTATCGTTATGTTGTTGATGGCAGCACCAGCACACGCTGATATTACCCATCGACTTTCTTCTAGTGTTCAACTGCAAGTGAATTCAGCAGCAACACAAGCAACTCGCCTCGGAAATTCCTATGCAATTTCAGGTAATAATGTGAATACTACTGACGGCACAACAACAGGAGCAGTTGCTACTGGTGATATCACAAGTGGTATCTACTCCCCTGGTTCTATCGATGCAACCCAAGCAACTGCTGGGGAAGCATTCTCATTCAGCACCTCATTCACACAAGCTGATGCCATTCCTACAAGCGCAGCGACTACTGGAGAGATTCAAAACTTCGGTATCATGACCAGTAATGCAGCTGGATCTGCTGGAGACTTAGCTGGAACAATCGATTCTACAGGATCAATGGCATTGACGGCTGGCGGAGCAGGTACAAGTGCTATCGGACAGTTCTCTAGTGAGATCATCATCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4d91be749e4b62f42ffdd72f4c4a22766c422aacf304f8f024c941176161816
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn30 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank