Protein

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Genbank accession
YP_009204271.1 [GenBank]
Protein name
tail family protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLVLRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPFDFTPKYTHTSNQFTIWNGSTDTINPRFKHDLKILINLNASGGFELINYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDTNRGIITLVPGKNEFKIKGDVSDIKTTFKFPFIYR
Physico‐chemical
properties
protein length:274 AA
molecular weight: 31265,70750 Da
isoelectric point:5,14304
aromaticity:0,14599
hydropathy:-0,25511

Domains

Domains [InterPro]
IPR008841
STR
8–126
IPR008841 DC_0197
YP_009204271.1
1 274
Architecture
STR
STR
STR 8-126 | STR 133-274
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009204271.1
1 274
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9459
Central domain 193 263 72 0,1135
C-terminal 264 274 10 0,2923
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-263
C-terminal
264-274

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SauS_phi2
[NCBI] 		1674930 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009204271.1 [NCBI]
Genbank nucleotide accession
NC_028862 [NCBI]
CDS location
range 14738 -> 15562
strand +
CDS
ATGCAATCTTTTGTAAAAATCATAGATGGTTACAAGGAAGAAGTAATAACAGATTTTAATCAGCTTATATTTTTAGATGCAAGGGCTGAAAGTCCAAACACCAATGATAATAGTGTAACTATTAACGGAGTAGATGGTATTTTACCAGGCGCAATTAGTTTTGCGCCTTTTTCATTAGTATTAAGGTTTGGCTATGATGGTATAGATGTTATAGATTTAAATTTATTTGAGCATTGGTTTAGATCTGTATTTAATCGTAGACATCCTTATTATGTTATTACTTCTCAAATGCCTGGTGTTAAATATGCAGTGAATACAGCTAATGTTACATCTAATTTAAAAGATGGTTCTTCAACTGAAATTGAAGTAAGTTTAAATGTTTATAAAGGGTATTCTGAATCAGTTAATTGGACCGATAGTGAGTTCTTATTCGACTCTAATTGGATGTTTGAAAATGGAATTCCTTTTGATTTCACACCTAAATATACTCATACATCAAATCAATTTACTATTTGGAACGGTTCTACTGATACGATAAATCCACGATTCAAGCACGATTTGAAAATATTAATTAATTTAAATGCGAGTGGAGGATTTGAACTGATTAATTATACAACAGGTGATATTTTTAAGTACAACAAAAGTATAGATAAAAACACTGATTTTGTTTTAGATGGTGTGTATGCATATCGAGATATAAACAGAGTGGGAATTGATACAAATAGAGGCATTATAACATTAGTGCCAGGTAAAAATGAATTTAAGATTAAAGGAGACGTCAGTGATATTAAAACTACATTTAAGTTTCCTTTTATCTATAGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b688b1aa1493636c6769027b273fba8721e45fad462968f012b402a97f36b768
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9243
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Efficacy of two Staphylococcus aureus phage cocktails in cheese production El Haddad,L., Roy,J.-P., Khalil,G.E., St-Gelais,D., Champagne,C.P., Labrie,S. and Moineau,S. 2016-01 — GenBank