Protein

View in Explore

Genbank accession

XSD88501.1 [GenBank]

Protein name

central tail fiber J

RBP type

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,84

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAKNMITGSKGGSSKPHTPKELEDNLISINKIKILLAVSDGECDPDFSLKNLYLDDVVVQNEDGSFNYENVKAEFRPGTQDQDYIQGFTDTASEVTVARDLTTKTPFSISVTNKNLSAIRIKILMPRGVTSEDDGDLVGVRVEYAVDMAVDGGSFNQVLSDVIDGKTTSGYDRSRRIDLPSFNQQVILRVRRVTPDSTTAKVTDLIRLQSYAEVVDAKFRYPLTGLVYVEFDSELFPNQIPRISTKKRWKIINVPSNYDPIDRTYSGSWNGTFKKAWSNNPAWVLYDIITSQRYGLDQRELGIPIDKWSLYDVGRYCDQMVPDGKGGQEPRYLCDVVIQSQVEAFQLVTDICSIFRGMTFWNGESLSIVVDKPREPSYIFTNDNVVNGEFSYTFASEKSMYTSCNVTFDDEQNMYQQDVEPVFDTEAALRFGHNPTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAISDNFWSSNLTLNLSGRVMEVSGLQVFVPFKVDARAGDFIMINKPDGSPVKRTISRVSGDGKTLELNVGFGFDVKPDTVFAIERTDIALQKYVVTEITKGDSDEEFTYRVTAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRLQAPKNVRLSSYSRVIQGVSVETMHVSWDKVEYASMYEMQWRKGNGNWHNTPQTANKETEVEGIYAGNYSVRVRAVSAGGSASPWSAIVNATLTGKVGEPGAPINLTASNDEVFGIRIKWGMPEGTEDTAYIELQQSETGKAESATLLSLVPYPQREYWHSILPAGYTNYYRVRSVDKIGNVSAWTNFVKGQSSIDLDDIVGDILDDILKSEGLKDLIEGAIDQSEKIQDAVESAKDSANKIKNQAQAIIENALATDTNLRWTRVENGKRKAEIGESFEMIATETEARIEAINKLRTEFDAGISAEITKVTKLISDETQARATQVNELKTEFTTEIGKTNAKVQQAQDAVTTETEARAQAIQNLDAKLTKQINDAKVELNANISRVDQAITDEAGARAEAVESLKAQYKKDISEAIKGAETEFNASIDRVNQAIANEEEARAQAVTSLDAKLTKQIGDTKKELGASIDRVDRAVTTEQQARAEAISGLDAKMTKLVGDTKTEINANVSRVDQAVASEAEARANADSALSTRIGDTQAALTQKMDSWVNAEQAGVMYGVNLGLKYKGKEYKAGMNLMLVGEGDNAKSQFLFSADRFAIIPSLSRGDLKTLPFVVENDQVFMQSTLIKDGTITNAKIGNEIRSNNFVDGSQGWRVGKDGSSQFNNVIVRGAVYANDGYFNGTVYANRIEGDVMIAESDTIPLKSVERFGSGDYEIFRINGENFDRQIDTNLIVWCSCSQRNHFRLIVQTPGKGDVEYYYLDTGNEGGGRAFALRGFFIPAVGRGQQNRIIVRVQESRNSTIKTYTPWVEREMGQKYNDVPNSSINNRNFIREKTYIAAYRAGRRIIA

Physico‐chemical properties

protein length:	1470 AA
molecular weight:	163175,55480 Da
isoelectric point:	5,04443
aromaticity:	0,08231
hydropathy:	-0,44252

Domains

Domains [InterPro]

IPR053171
Unmapped
2–1319

IPR053171

DC_0129
STR
2–993

DC_0129 DC_2322 DC_1904

IPR055385
ATT
92–217

IPR055385 IPR032876 IPR036116 IPR013783 Coil DC_0738 IPR015406

IPR013783
STR
627–722

IPR013783

IPR003961
STR
628–717

IPR003961

IPR003961
STR
628–722

IPR003961

XSD88501.1

1 1470

Architecture

STR

ATT

STR

ATT

STR

RBD

STR 2-91 | ATT 92-217 | STR 218-340 | ATT 341-495 | STR 496-993 | STR 997-1089 | RBD 1090-1469 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	2	1319	InterPro	Viral Tip Attachment Protein	-	-	-	-
DC_0129	STR	DC_0129	2	993	Novel HMM	DC_0129	Central	Low	Positional only	234 proteins / 234 hits
IPR055385	ATT	DC_0360	92	217	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	495	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	627	716	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	627	722	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	628	717	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	628	722	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	724	816	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
Coil	Unmapped	-	850	877	Coils	Coil	-	-	-	-
DC_2322	STR	DC_2322	997	1047	Novel HMM	DC_2322	Central	Low	Positional only	13 proteins / 13 hits
DC_0738	STR	DC_0738	1041	1089	Novel HMM	DC_0738	Central	Low	Positional only	12 proteins / 12 hits
DC_1904	RBD	DC_1904	1080	1469	Novel HMM	DC_1904	C-terminal	Low	Positional only	28 proteins / 28 hits
IPR015406	RBD	DC_0135	1163	1300	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XSD88501.1

1 1470

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	1412	1412	0,8828
Central domain	1413	1459	48	0,5418
C-terminal	1460	1470	10	0,7126

Note: Constraints were applied during segmentation.
Fixed 36 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-1412

Central
1413-1459

C-terminal
1460-1470

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Klebsiella phage vB_Kpn_K50_evo3 [NCBI]	3412919	Viruses >
Host	Klebsiella pneumoniae [NCBI]	573	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

XSD88501.1 [NCBI]

Genbank nucleotide accession

PQ569680.1 [NCBI]

CDS location

range 16651 -> 21063
strand +

CDS

ATGGCAAAAAATATGATAACCGGGAGTAAAGGCGGTTCCTCAAAGCCTCATACTCCAAAAGAGTTGGAGGATAACCTGATTTCAATTAACAAAATCAAGATCTTGCTCGCGGTTTCAGATGGCGAGTGCGACCCTGATTTTTCGTTAAAGAATCTATATCTTGACGACGTTGTTGTTCAGAACGAGGACGGCTCATTTAACTATGAGAATGTCAAGGCTGAATTTAGACCAGGCACGCAGGATCAGGACTACATCCAAGGCTTTACTGACACTGCAAGCGAAGTGACCGTTGCGCGAGACCTGACAACAAAGACGCCGTTTAGCATTTCAGTAACGAACAAAAACCTGTCCGCGATCCGCATCAAGATTCTGATGCCGCGAGGCGTTACCAGTGAAGATGATGGCGATCTGGTTGGTGTTCGCGTTGAGTATGCGGTTGATATGGCGGTTGATGGCGGATCGTTTAATCAAGTGTTAAGCGACGTTATCGACGGTAAGACGACAAGCGGTTATGACCGCAGCCGTCGAATCGACTTACCAAGCTTTAACCAGCAGGTAATTTTACGAGTTCGTCGTGTTACTCCTGACAGCACAACAGCGAAGGTTACGGATCTAATCCGATTGCAGAGCTACGCCGAAGTCGTCGATGCGAAGTTCCGTTATCCTCTGACTGGTCTTGTTTATGTTGAGTTCGACTCTGAATTGTTCCCAAACCAGATCCCTCGAATCTCAACAAAGAAACGGTGGAAGATAATCAACGTCCCAAGCAACTATGATCCTATTGACAGGACTTATAGCGGATCTTGGAACGGTACGTTTAAAAAGGCGTGGAGCAATAACCCTGCATGGGTTCTTTATGACATTATCACCAGTCAGCGCTATGGATTAGATCAGCGTGAGTTGGGGATCCCTATCGACAAATGGAGCCTTTACGATGTAGGGCGCTATTGCGATCAGATGGTTCCAGATGGAAAGGGCGGGCAGGAGCCGCGCTATCTGTGCGATGTTGTGATTCAAAGCCAGGTTGAGGCGTTCCAGCTTGTGACTGACATTTGCTCAATCTTCCGGGGAATGACTTTCTGGAATGGCGAAAGCCTTTCGATTGTGGTTGATAAGCCGCGCGAGCCGTCTTACATCTTCACAAACGACAACGTTGTTAACGGCGAGTTTTCTTACACGTTCGCCAGCGAAAAGAGCATGTACACATCATGTAACGTGACCTTTGACGATGAGCAGAACATGTATCAACAAGACGTTGAGCCAGTTTTCGACACGGAGGCCGCTTTACGGTTTGGACACAATCCAACAAGCATAACCGCTATCGGGTGCACACGACGCAGCGAGGCAAACCGCCGGGGCCGCTGGATCCTGAAAACCAACTTGCGCAGCACAACGGTTAACTTCGCAACCGGACTTGAAGGTATGATCCCGACAATCGGCGACGTTGTGGCAATCTCGGACAACTTCTGGAGCAGCAACCTAACTCTCAACCTATCCGGTCGAGTGATGGAGGTTAGCGGTCTGCAAGTTTTCGTGCCGTTTAAGGTTGACGCACGCGCTGGTGACTTCATCATGATCAACAAGCCTGACGGCTCGCCAGTTAAGCGCACCATATCGCGCGTAAGCGGCGACGGTAAGACTTTGGAGCTTAACGTAGGGTTTGGCTTTGACGTAAAACCGGATACCGTATTTGCGATTGAGCGCACTGATATAGCGCTTCAAAAATACGTTGTAACGGAGATAACGAAAGGCGATAGCGATGAGGAGTTTACCTATCGTGTAACGGCTGTTCAGTATGACCCGAACAAGTACGATGAGATCGACTATGGCGTAAACATTGATGATCGACCAACGTCGATTGTTGACCCTGACAGACTGCAAGCGCCTAAAAACGTTCGCTTGTCGTCTTACTCTCGCGTTATCCAGGGCGTAAGCGTGGAAACAATGCACGTTAGCTGGGATAAGGTCGAATATGCGTCAATGTACGAAATGCAGTGGCGAAAAGGCAATGGCAACTGGCACAACACGCCGCAGACGGCGAACAAAGAAACGGAAGTTGAAGGCATTTATGCAGGCAACTACTCAGTGCGAGTTCGCGCAGTATCCGCGGGCGGGAGTGCGTCTCCGTGGTCAGCGATTGTTAACGCTACTCTGACCGGGAAAGTTGGCGAGCCTGGCGCGCCTATTAACCTGACTGCATCTAATGATGAAGTTTTTGGCATTAGAATCAAATGGGGTATGCCGGAAGGCACGGAGGACACCGCATACATTGAGTTGCAGCAATCTGAAACCGGAAAGGCTGAATCAGCAACTTTGTTGAGTTTGGTTCCGTATCCGCAGCGCGAATACTGGCACAGCATTTTGCCTGCTGGTTATACCAACTACTATCGCGTAAGGTCGGTGGATAAGATCGGCAACGTGTCGGCCTGGACTAACTTTGTTAAAGGTCAATCCTCAATCGATCTTGACGATATCGTTGGCGACATTTTAGACGACATTCTTAAAAGCGAAGGCTTAAAAGATTTGATCGAGGGAGCCATTGATCAATCAGAAAAGATTCAAGATGCGGTTGAATCAGCCAAAGACTCGGCCAACAAGATTAAGAATCAGGCGCAAGCGATTATCGAAAACGCTCTTGCAACCGATACTAATCTGCGATGGACACGAGTAGAAAACGGCAAGCGAAAAGCCGAGATCGGGGAGTCATTCGAAATGATAGCCACCGAGACGGAAGCCAGGATTGAAGCCATAAACAAGCTTAGGACTGAATTCGACGCCGGAATCAGCGCGGAGATAACCAAAGTAACGAAGCTTATCTCTGATGAGACTCAGGCGCGAGCGACTCAGGTTAACGAGCTTAAAACAGAGTTCACGACCGAGATCGGAAAGACCAACGCCAAAGTGCAGCAGGCTCAGGATGCGGTAACAACCGAGACGGAAGCAAGGGCGCAAGCAATCCAGAATCTTGACGCGAAGCTAACCAAGCAGATTAATGATGCGAAAGTTGAGCTAAACGCCAATATCAGCAGGGTTGACCAGGCGATTACGGATGAAGCCGGGGCGCGAGCGGAGGCGGTAGAATCGCTTAAAGCTCAGTATAAAAAGGACATTAGCGAAGCCATAAAAGGCGCGGAGACTGAATTTAACGCGAGCATTGATAGAGTCAACCAAGCCATAGCCAACGAGGAAGAGGCGCGTGCTCAGGCCGTAACAAGCCTTGACGCGAAGCTAACGAAACAGATTGGCGACACGAAAAAAGAGCTTGGTGCATCAATCGACCGGGTAGATCGGGCAGTCACTACCGAGCAGCAAGCGCGAGCGGAAGCGATTTCTGGTCTTGACGCGAAAATGACAAAACTTGTCGGAGATACAAAGACTGAAATTAACGCTAATGTCAGTCGAGTTGATCAGGCGGTTGCAAGTGAGGCGGAGGCGAGAGCTAACGCTGACTCGGCGTTAAGCACAAGGATCGGAGATACTCAGGCTGCATTAACTCAGAAAATGGATTCATGGGTTAACGCGGAGCAAGCTGGCGTTATGTACGGCGTAAACCTTGGCCTCAAGTATAAGGGCAAGGAGTACAAGGCCGGGATGAACTTAATGCTTGTTGGTGAGGGTGACAACGCAAAATCTCAGTTCCTGTTTAGCGCTGATCGGTTTGCTATCATTCCATCGTTAAGCCGTGGCGATCTTAAAACGCTGCCGTTTGTTGTTGAAAATGATCAGGTGTTCATGCAATCGACGCTGATTAAAGACGGCACGATCACAAACGCGAAGATTGGAAATGAGATCCGCTCAAACAATTTTGTTGATGGTTCTCAAGGCTGGCGTGTTGGCAAGGATGGCAGTTCGCAGTTCAATAACGTTATCGTTCGCGGAGCGGTTTACGCTAATGATGGCTACTTTAACGGCACCGTTTACGCTAACCGCATCGAGGGCGACGTGATGATCGCAGAGTCTGACACGATACCGCTCAAGAGCGTTGAGCGCTTTGGAAGCGGCGACTATGAGATTTTCAGAATTAACGGGGAGAACTTTGATCGACAAATCGACACAAACCTTATCGTCTGGTGTTCTTGCTCTCAGCGAAACCACTTCCGCTTGATTGTGCAAACTCCAGGTAAGGGCGATGTTGAATATTATTATCTTGACACTGGTAACGAAGGTGGTGGTAGGGCGTTTGCTTTGCGCGGATTCTTCATTCCGGCAGTGGGCAGAGGGCAGCAAAACAGGATCATTGTTAGGGTTCAGGAAAGCCGAAACTCAACAATCAAGACTTACACACCTTGGGTTGAAAGGGAAATGGGCCAGAAGTACAACGATGTTCCTAACTCCTCCATTAACAACCGAAACTTCATTCGTGAAAAAACCTATATTGCAGCATACCGAGCAGGTCGCCGCATTATAGCGTAA

Genome Context

Tertiary structure

PDB ID

653152c47b044b5f5a073e0b34186a1e809411bbdd67bfa51cf1e74248f234e5

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6766

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence