Protein

View in Explore
Genbank accession
YP_010748485.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVTTLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEIHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLAADTDMNPENDRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGLGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTSNQGMTIDAPHSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALQLRIHKLTKTLDSGALYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDAAVRDNGAISMYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72945,81830 Da
isoelectric point:5,05079
aromaticity:0,08626
hydropathy:-0,16023

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
96–132
IPR040775 IPR012332
IPR012332
STR
136–684
IPR012332
IPR015331
RBD
138–684
IPR015331
YP_010748485.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010748485.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9931
Central domain 155 600 447 0,9902
C-terminal 601 684 83 0,8520
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-600
C-terminal
601-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_ER1
[NCBI] 		2801553 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus ER1
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010748485.1 [NCBI]
Genbank nucleotide accession
NC_073214.1 [NCBI]
CDS location
range 25606 -> 27660
strand +
CDS
ATGTCTAGTGGTTGCGGCGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCAGGTGGCGCAGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACCCTGCCTGCTGTTTTACGCGATGCTGGTTTCTCCCCGGCGTCTTTCAACTTCACAACCGGCGGGACCCTGGGAGCTGACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGTGTTCTTATTGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGCGCTACAACGCCGTGGGTGATTAAACCGTGGACCGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGACCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTTCCTGGTATAGAATCACTCCTCCCTCCGGAAGCTAAAGACCAAAACATTTCGTCTGTCCTTGAGATACGGGAATGTACGGGCGTTGAGATTCATCGGGCTAGCGGTCTTATGGCGTGCTTCCTGTTCCGCGGGTGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGAGGGAAGGACGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGTAAGGGTAACTATGTCATTGGCGGCCGCACGAGCTACGGCTCAGTAAGTAGCGCGCAATTTTTACGTAACAATGGTGGTTTCGCGCGCGATGGTGGGGTCATCGGGTTTACCTCATATCGTGCGGGGGAAAGTGGTGTTAAAACATGGCAAGGTACGGTAGGTTCTACTACATCTCGTAACTACAACCTGCAATTCCGGGATTCTGCGGTACTATACCCTGTATGGGACGGCTTCGATTTAGCCGCAGATACTGACATGAACCCAGAAAATGACCGCCCGGGGGATTTCCCATATTCCCAATACCCGGTACATATGCTCCCTCTAAACCATTTAATTGACAATCTACTGGTTAGGGGTTCTTTGGGGGTAGGTTTAGGCATGGACGGGCAGGGCCTATATGTTTCAAATATAACTGTAGAGGATTGTGCAGGTTCGGGTGCGTATCTTCTTACTCATGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAAAACTTCCCCGCGAACCAGATATACATCTCAGGGGCATGCCGTGTGAACGGCCTTCGCTTAGTCGGCATCCGGTCTACCAGCAACCAGGGTATGACGATAGACGCACCTCACTCTACTGTAAGCGGAATAACGGGCTTCGTGGACCCATCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCCGCGGCTCTACAGTTGCGTATCCACAAACTGACAAAAACCCTTGATAGCGGAGCATTGTACTCCCACATAAACGGCGGGCCAGGTTCTGGTTCGGCATGGACCGAAATTACCGCTATTGCAGGGAGCTTGCCCGATGCCGTGTCATTAAAAATAAACAGGGGGGACTATCGTGCTGTTGAGATACCTGTAGCGGTAACCGTTTTACCTGATGCTGCGGTTCGTGATAACGGGGCTATCTCAATGTATCTGGAAGGTGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb676068c7a9f436af01a4514aea9dab53b81168b99c813905fdc4d45ba6e1f9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6798
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi Rodwell,E.V., Wenner,N., Pulford,C.V., Cai,Y., Bowers-Barnard,A., Beckett,A., Rigby,J., Picton,D., Blower,T.R., Feasey,N.A., Hinton,J.C.D. and Perez-Sepulveda,B. — — GenBank