Protein

View in Explore
Genbank accession
XQO94856.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNNVVISGSKAGESEQHTPVEAPNDLRSVATARILLALGEGEFEGGVNEKSIYLDGTPLMSQNGTINFPGVKWDFRSGTVDQQYIQGFPAVESETAIGVELKSDAPWTRSFNDGQISAVIIRFRWPSLQEQKDNGDVVGYSIDYRVEVSTDGGPYIVASQQGVTGKTTSNYERSVRINLPSGNGWVVKVTRLTPNMNNNRIADLMYIGAVTEVIDRKMRYPNTALLGIQFDASQFSNIPTISVLAKMRKIRVPDNYDPVTRTYSGIWSGGFKIAYSNNPAWVTYDIIIENRFSVGDKVGPQFVDKYELYKIAQYCDQQVPDGKGGTEHRYECNIYIATAAEAWQVLRDIASIYRGMIYWMQSQMTVRADMPRDTDYIFTNANVIDGTFTYSGSDERVKYTRALVSYDNPDNNFESDVTTTYDNALQRRYGDNVVELSAFGCTRESEAQRRGKWAIYTNNNDRTVAFKTGMEGEIPMIGHIVAVADDLISGVRIGGRISNVSADGKTITLDREVAAAKAGDRLLVNLPSGKAETRTVETVTGRDIKVSSVYSESPAKFLQWTLESDDITHQLFQIVSVKKADTDSIEYEFAGVSYNPSKFDFIDTGARIEDRPVSQIPVGGMEAPEEVLISQSVYVEQTMAITTMTIGWSAVKNSVAYEVEWRKDYGEWVKMPRTGQLSVDIKGVYTGQYLARVRAVSSAGVASIAKPSMLTDIVGKVGEPPSLAIFRTSSKAFSIYLDWSFGPNSEDALYTEIEYATNAQGTNPSFLGSYAYPTSDHLMMGLAAGVEFWFRARIRDRTGNVGAWTDWTYGVSSVDAEELLSYLEGQIGSGELAPGLLEEITNDVAAGIGDEIIGDVEDSILGFLTGDDENAPQDMLWYAGDDGTQESFVGNVTITSAYNDQDYSKAKQIFLLAGRVEDNKALISRVDAISVSRDEALAQSLSLISVEVGENTAKITSEQTARVTADEALAQDIQALAVTVGENTAAIATEQTVRADADTALAELVQTVSAQIGDIEAVVQQTSEAVVDLDGSIKANWQVKTEVNADGRVVQAGVGLGASIGADGTTRSEFLVMADTIGFLNSIDGQIHTPFVFDTVNDTAFLNSAIIGDATISYAKIANDLQSTNYQAGLVGWKLDKNGVFENNGSDSSGRMVQSNNRIDVYDASGALRVRIG
Physico‐chemical
properties
protein length:1173 AA
molecular weight: 127942,92620 Da
isoelectric point:4,55993
aromaticity:0,08781
hydropathy:-0,24126

Domains

Domains [InterPro]
DC_0014
STR
1–1173
DC_0014
IPR053171
Unmapped
4–842
IPR053171 IPR015406
IPR055385
ATT
91–216
IPR055385 IPR032876 IPR013783
IPR036116
STR
638–708
IPR036116
XQO94856.1
1 1173
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-216 | STR 217-339 | ATT 340-500 | STR 501-1173
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQO94856.1
1 1173
Domain Start End Length (AA) Confidence
N-terminal 1 502 502 0,8927
Central domain 503 1121 620 0,0566
C-terminal 1122 1173 51 0,7468
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-502
Central
503-1121
C-terminal
1122-1173

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPBES
[NCBI] 		3410927 Viruses >
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQO94856.1 [NCBI]
Genbank nucleotide accession
PV171465.1 [NCBI]
CDS location
range 13174 -> 16695
strand -
CDS
ATGAATAACGTTGTGATCTCAGGAAGTAAAGCGGGTGAGTCAGAGCAGCATACACCCGTAGAAGCGCCAAATGATTTGCGATCAGTCGCTACCGCCAGAATACTGCTGGCACTTGGCGAGGGTGAGTTTGAAGGTGGAGTGAATGAAAAAAGCATCTACTTAGATGGCACTCCATTAATGTCACAAAATGGCACAATAAACTTTCCCGGTGTTAAATGGGACTTTCGCTCAGGAACGGTTGACCAGCAATATATCCAAGGCTTTCCAGCGGTAGAATCAGAAACAGCGATCGGCGTTGAGTTAAAAAGCGATGCACCTTGGACGCGCTCATTTAACGATGGTCAAATCTCTGCAGTCATTATTCGCTTTCGCTGGCCTTCACTTCAAGAGCAGAAAGATAATGGTGATGTTGTTGGTTATTCGATTGACTACCGAGTTGAAGTGTCTACTGATGGCGGTCCTTATATTGTTGCATCCCAACAAGGTGTAACAGGAAAAACAACAAGCAATTACGAGAGAAGCGTCCGCATTAATTTACCAAGCGGTAACGGCTGGGTGGTGAAGGTTACGCGCTTAACGCCAAACATGAATAACAACCGTATTGCTGACCTTATGTACATTGGCGCGGTTACTGAAGTTATCGACCGTAAAATGCGCTACCCAAACACGGCGCTTTTAGGAATTCAGTTTGATGCAAGTCAATTTAGTAACATCCCGACGATCAGTGTTCTGGCTAAAATGCGCAAAATTCGGGTGCCAGATAATTACGATCCAGTAACAAGGACGTACAGTGGAATTTGGTCTGGCGGTTTTAAAATTGCTTACAGCAATAACCCTGCTTGGGTTACTTACGACATCATCATTGAAAACCGTTTCTCGGTTGGTGATAAAGTTGGTCCTCAGTTTGTTGATAAGTACGAACTGTATAAAATCGCTCAGTATTGCGATCAGCAAGTGCCGGACGGCAAAGGCGGCACAGAGCATCGCTACGAATGCAATATCTACATTGCGACCGCTGCCGAAGCTTGGCAGGTTCTACGTGATATAGCATCTATCTACCGAGGCATGATCTATTGGATGCAGAGCCAAATGACGGTTCGTGCAGATATGCCACGCGATACAGATTACATCTTCACTAACGCTAACGTTATTGATGGAACATTCACGTACTCAGGAAGTGACGAACGAGTTAAATACACTCGCGCACTTGTGAGCTACGACAACCCAGATAACAACTTTGAATCTGATGTAACCACAACTTACGACAACGCATTGCAGCGCCGCTACGGTGACAATGTTGTTGAGCTTTCAGCCTTTGGCTGCACTCGCGAATCCGAAGCGCAGCGCCGCGGTAAATGGGCTATTTATACCAACAATAACGACCGTACCGTTGCTTTTAAAACTGGCATGGAAGGCGAGATTCCGATGATCGGCCATATCGTGGCGGTCGCTGACGATCTTATCTCTGGCGTTAGAATTGGTGGCCGTATCTCTAATGTTTCGGCCGATGGAAAAACAATCACGCTTGATAGAGAAGTTGCGGCCGCTAAAGCTGGCGATCGTCTTCTGGTTAACTTACCAAGCGGCAAAGCGGAAACTAGAACGGTTGAAACGGTAACGGGTCGTGATATTAAGGTGTCCTCTGTTTACAGTGAATCACCGGCTAAGTTCTTGCAGTGGACATTAGAATCAGACGACATAACGCACCAACTGTTCCAAATTGTTTCAGTTAAAAAAGCAGATACTGACAGTATAGAATATGAGTTTGCAGGTGTTTCTTACAATCCAAGCAAGTTTGATTTCATCGATACTGGCGCAAGAATTGAAGATAGGCCAGTAAGCCAAATCCCAGTCGGCGGAATGGAAGCGCCGGAAGAGGTGTTAATCTCTCAGTCTGTTTACGTCGAGCAAACAATGGCAATCACCACCATGACGATAGGCTGGTCTGCTGTTAAGAATTCCGTAGCTTACGAAGTTGAGTGGAGAAAAGACTACGGCGAATGGGTGAAAATGCCGCGCACTGGTCAGTTAAGCGTGGATATTAAAGGCGTTTACACTGGCCAGTATTTGGCGAGAGTTCGCGCCGTTAGCTCGGCTGGTGTTGCTTCCATCGCTAAACCTTCAATGCTAACTGATATCGTCGGTAAGGTAGGAGAACCTCCATCACTAGCGATATTCAGAACCAGCAGCAAAGCCTTTTCTATCTATCTTGATTGGTCTTTTGGGCCTAATTCGGAAGATGCGCTTTACACTGAGATTGAATACGCAACCAACGCCCAAGGCACTAACCCTTCATTCTTGGGTAGCTACGCCTATCCAACAAGTGATCACTTGATGATGGGCCTAGCGGCTGGCGTTGAGTTCTGGTTTAGAGCAAGGATAAGAGACCGAACCGGAAACGTTGGCGCGTGGACAGATTGGACTTACGGAGTTTCATCCGTAGACGCCGAAGAGCTGCTAAGTTATCTAGAAGGTCAGATCGGCTCTGGTGAATTAGCACCCGGCTTGCTTGAAGAGATCACCAATGACGTTGCCGCTGGAATTGGCGATGAAATTATAGGTGATGTCGAAGATAGTATTTTAGGCTTCTTGACTGGCGATGACGAAAACGCACCTCAAGATATGCTTTGGTACGCTGGCGATGATGGCACTCAGGAATCATTTGTCGGTAATGTAACTATCACATCCGCTTACAATGACCAAGATTATTCAAAAGCCAAGCAGATATTTTTACTGGCTGGCAGGGTTGAGGATAACAAAGCCTTAATATCACGAGTGGATGCAATATCCGTATCGAGAGACGAAGCACTTGCTCAATCACTTAGTTTAATTTCGGTAGAAGTTGGTGAAAACACCGCCAAGATAACCTCAGAACAAACCGCAAGAGTTACAGCTGATGAAGCACTGGCGCAAGACATCCAAGCACTAGCGGTAACGGTTGGTGAAAATACAGCCGCAATCGCAACAGAGCAAACAGTAAGGGCAGACGCTGATACTGCATTAGCAGAGCTAGTTCAAACGGTATCAGCACAAATTGGCGATATTGAAGCGGTAGTGCAACAAACGTCAGAAGCCGTGGTCGATCTTGACGGTTCAATTAAAGCGAACTGGCAAGTTAAAACCGAAGTAAATGCAGACGGTCGAGTTGTTCAAGCCGGGGTTGGTTTGGGTGCGTCGATCGGAGCAGACGGAACAACGCGATCTGAGTTTTTGGTTATGGCCGACACAATTGGTTTTTTAAACTCAATCGACGGTCAGATACACACGCCATTCGTTTTTGATACCGTCAACGATACTGCATTTCTTAACTCAGCAATAATCGGAGACGCAACCATCAGCTATGCCAAAATAGCTAATGATTTGCAATCAACGAATTATCAAGCTGGTTTGGTTGGCTGGAAGCTTGATAAAAATGGTGTTTTTGAAAATAACGGCTCAGACTCGTCAGGAAGAATGGTTCAAAGCAACAACAGAATTGATGTTTATGATGCGTCTGGAGCACTAAGAGTCAGGATCGGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a382bad63648df0b7ca74feae863696c9e21b36a2c31f304bb0ff6c3dfe33cc1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7661
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio anguillarum phage VPBES Altinok,I., Ture,M., Cebeci,A., Ozturk,R. and Ustaoglu,D. 2015-10 — GenBank