Protein

View in Explore
Genbank accession
YP_002003781.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTITQFPSGNTQYRIEFDYLARTFVVVTLVNSSNPTLNRVLEVGRDYRFLNPTMIEMLVDQSGFDIVRIHRQTGTGLVVDFRNGSVLTASDLTNAELQAIHIAEEGRDQTVDLAKEYADAAGSSAGNAKDSEDEARRLAASIKAAGLIGYITRRSFEEGFNVTTWNEVLLWEEDGGYYRWDGTLPKEVPAGSTPSTTGGVGLGAWVSVGDASLRSNLISDNSINGDALIAVKQPFANSTTRTQHDKNSDIINIRDFGAVGDWDPVTDTGTDSTQALINAVNAAVALGGAEIVVPEGVFCTTKPWYIPSNITVRGSGYNSVIYNYQVSGSVFPQTNCIHVGYSSEWGNNGAPMPTAPDAKMAEILANNFSNITARNSRVTNIRVMNKGFGLGIWFMNAMDCSCDNIWATNTTTPINIANDNPTAEMACKNISVDNIFQDDGTLGEWYDLAFLGSALDCSLSRLYNNPSTKSKLAEMIAINGARRCKLSKLSLCGNEDGTSLQIATGVLISGSSTGNSVTNSTFSKMSNGVSITGTGGNTVKDCRGENIYTTVYINSPKNKISGLSGVDVINDIRGNSDATRNDITDCSINSVNIFDVNPPAMYNRFRGNCKNDSILFNNYNSYAGLRARKIAMFPADAAMLAADREVTTNNLAHITRNSNGIFSLYYKIPNNVKQLTKVTVYGYGAQSGEAVDTSIVGIDSDNNTNGFPTFQSLGTKTTTSTADFAFVFGPTNPFYAAGSYYVKVTVTIGNTATQIRSVMLECLCDD
Physico‐chemical
properties
protein length:767 AA
molecular weight: 82638,13520 Da
isoelectric point:4,94223
aromaticity:0,08475
hydropathy:-0,20743

Domains

Domains [InterPro]
DC_0369
STR
1–764
DC_0369
IPR005604
ATT
10–113
IPR005604 G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
155–211
IPR040775 IPR011050
YP_002003781.1
1 767
Architecture
ATT
STR
ATT
STR
ATT 1-113 | STR 114-150 | ATT 151-209 | STR 210-764 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002003781.1
1 767
Domain Start End Length (AA) Confidence
N-terminal 1 262 262 0,9947
Central domain 263 621 360 0,9894
C-terminal 622 767 145 0,9895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-262
Central
263-621
C-terminal
622-767

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EcoDS1
[NCBI] 		532075 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002003781.1 [NCBI]
Genbank nucleotide accession
NC_011042 [NCBI]
CDS location
range 33109 -> 35412
strand +
CDS
ATGTCCACGATTACACAATTCCCTTCAGGAAACACTCAGTACAGGATTGAGTTCGACTACCTAGCCAGAACGTTTGTTGTTGTTACGCTGGTGAATAGCTCTAACCCTACCCTGAACCGTGTACTGGAAGTTGGTAGAGATTACCGATTCCTTAATCCAACGATGATTGAGATGTTGGTTGACCAATCAGGTTTCGACATCGTTCGTATTCACCGTCAGACTGGAACTGGCTTAGTGGTAGACTTCAGGAATGGCTCAGTGTTGACAGCTAGTGACCTGACCAATGCAGAGCTTCAGGCTATCCATATTGCAGAAGAAGGTCGAGACCAAACTGTTGACTTAGCGAAGGAATATGCCGATGCTGCTGGTAGCTCTGCTGGCAACGCTAAGGATAGCGAGGACGAAGCACGACGACTAGCTGCGAGTATCAAGGCAGCTGGTCTAATTGGCTATATTACCCGTCGCTCCTTCGAGGAAGGCTTCAACGTTACAACATGGAACGAGGTCCTGCTATGGGAAGAGGATGGTGGTTATTACCGCTGGGATGGTACGCTACCTAAAGAAGTTCCTGCTGGTTCAACCCCTTCGACAACTGGTGGCGTTGGTCTTGGTGCATGGGTGAGTGTTGGTGACGCCTCTTTGCGTTCAAATCTTATTAGTGACAATTCAATTAATGGAGATGCACTGATAGCCGTCAAGCAGCCATTTGCTAATTCCACGACAAGAACGCAGCATGATAAAAACTCGGACATCATAAATATCCGTGATTTTGGTGCTGTTGGCGACTGGGACCCAGTCACAGACACCGGAACTGACAGCACACAAGCGCTTATTAACGCGGTTAATGCCGCCGTTGCGTTAGGAGGGGCTGAAATTGTCGTCCCTGAAGGGGTGTTCTGTACTACAAAGCCGTGGTATATACCGAGCAACATCACTGTCAGGGGTAGCGGGTATAATTCTGTAATTTACAACTATCAGGTTTCTGGTTCAGTTTTCCCGCAAACTAACTGCATTCACGTTGGGTATAGCTCCGAGTGGGGAAACAACGGCGCGCCAATGCCAACAGCCCCTGATGCAAAAATGGCTGAAATTCTGGCAAATAATTTCAGTAACATTACAGCGAGGAATTCTCGTGTAACTAATATCCGCGTAATGAATAAGGGTTTCGGTCTTGGTATTTGGTTCATGAATGCTATGGATTGCTCTTGCGACAACATATGGGCGACTAACACTACCACACCAATTAACATAGCCAATGACAACCCCACGGCGGAAATGGCGTGCAAAAATATATCCGTTGATAATATATTTCAAGATGACGGCACGTTAGGCGAATGGTACGACTTGGCTTTCTTAGGCTCTGCGCTGGACTGTTCTTTATCTCGTCTATACAACAACCCGAGCACTAAAAGTAAATTGGCAGAAATGATAGCTATCAACGGCGCACGACGTTGTAAACTATCAAAACTATCCCTCTGCGGCAATGAGGACGGGACTAGCCTACAAATCGCCACCGGGGTGCTTATTTCTGGTTCATCTACAGGGAACTCTGTAACTAACTCAACATTCTCTAAGATGTCCAATGGGGTGAGTATCACCGGCACTGGCGGCAACACAGTAAAAGATTGTCGAGGAGAAAACATTTACACAACTGTCTATATAAACTCGCCGAAAAACAAAATTTCCGGATTGTCTGGTGTTGATGTTATTAATGACATTCGCGGCAACTCCGATGCAACAAGAAACGATATCACCGACTGCTCCATAAATAGCGTCAACATCTTCGATGTTAACCCCCCAGCTATGTATAATAGATTCAGAGGTAACTGCAAAAACGATTCTATTCTTTTTAATAACTACAATAGCTATGCTGGGCTTCGTGCGAGAAAGATAGCAATGTTCCCCGCCGACGCTGCTATGCTCGCGGCTGATAGAGAAGTAACGACAAATAACCTTGCGCACATAACCAGAAATTCTAACGGAATATTTTCGTTATATTACAAAATACCTAATAACGTTAAGCAATTAACTAAAGTTACAGTTTACGGGTATGGCGCACAATCCGGTGAAGCTGTAGACACAAGCATTGTTGGCATTGACTCCGATAACAACACAAATGGATTCCCAACATTTCAGTCACTAGGCACAAAAACTACAACTTCCACCGCCGATTTTGCTTTTGTATTCGGCCCAACTAACCCTTTTTATGCTGCGGGTAGTTATTATGTGAAAGTAACGGTGACAATAGGTAATACTGCGACACAAATAAGGAGTGTTATGCTTGAATGCCTTTGTGATGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4bf33cbb8d6b2fab086c225f36d998017f00dc11dcef15a1ba524320050c4444
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7709
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequences and analysis of several T7-like bacteriophages Savalia,D., Severinov,K. and Molineux,I. 2013-02-01 — GenBank