Protein

View in Explore
Genbank accession
URY12506.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAEYKLSELNSIDTVRSEDLLHLRIIKRSDMLGDEDRKMTYANFLASFKLERFLQLTGGDMTGNLGIVKLRYGGKDLLDPTGSSEVILGDTAKTFRINASALRLTVNDATRSATVYHTLNKPSPNELGMRTNTENDARYAMKETENTFLARQIININGVGLTLKSILPDGGAYIEARDSNNALRFTVGNLTSGTDVTLVNSKGATLTLGTNSVSVDKNFEINGQVQPNNWNNLDARFFTQTAADQRFARLNASNNFVGVNNFNGKTYVIADRNALNLRAATENAALFMRGYNSAGTGAWYVGQPDGTQSEIVLANQMTNVNLKIATEFSFNKAINVSGQVKPSDFANFDTRYVPSSLTNVLARTNAANVFTNPQTIVTTDAAFTLQSGTANSPLYIVGANADGNRRWYVGNGEGSRPNSLFLYNYSSGGVQLEIADTFMFNRSVSVTGQVQPTDWSNFDSRYYTQSAANSRYMLSGVSGTGTEVGDETGVAWNAKTGLYNVTSSSGGSTHLVYQMYLGIGASTPSAQLRFEYKNGGIYYRTARDSFGFEEFWSKIYTDKAKPTPAELGAYTKAEVDQRIASAVTDSTDLKKVYPVGIVTFFASNVNPNTAFPGTTWTYLTEGANRTIRIGSANGSDVKGLGGADTVALSVGHIPAHTHSFSGTTTTFDYGTKYTDAQGAHDHDRGNMEISGDFGFFRSDANSFYTASGAFAISGSQASRGYTGSQFTYGTPVNFYASRTWTGRTSWVGAHGHGVGIGAHNHTFSGNTGATGSGAAFSVLNTYIKLMAWVRTA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 85542,55270 Da
isoelectric point:7,76832
aromaticity:0,10732
hydropathy:-0,33523

Domains

Domains [InterPro]
DC_1993
STR
115–359
DC_1993 G3DSA:6.20.80.10 IPR022246
G3DSA:6.20.80.10
STR
158–217
G3DSA:6.20.80.10 G3DSA:6.20.80.10 DC_1993
IPR048388
ATT
170–246
IPR048388 IPR048388 IPR048388
URY12506.1
1 792
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 115-169 | ATT 170-246 | STR 247-272 | ATT 273-357 | STR 358-382 | ATT 383-474 | STR 475-788 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh20
[NCBI] 		2950766 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY12506.1 [NCBI]
Genbank nucleotide accession
ON528730.1 [NCBI]
CDS location
range 47785 -> 50163
strand -
CDS
ATGGCTGAATATAAGCTAAGTGAGCTAAACAGTATTGATACAGTTCGCTCAGAAGATTTACTTCACCTAAGAATTATCAAAAGGTCTGATATGCTAGGTGATGAAGACCGTAAAATGACCTATGCAAATTTCCTTGCCTCTTTCAAACTAGAAAGATTCTTACAACTAACTGGTGGGGATATGACAGGGAATCTTGGCATCGTCAAATTAAGATACGGTGGAAAAGACTTATTAGACCCAACAGGTTCTTCTGAAGTTATTCTCGGTGACACTGCCAAGACCTTTAGAATTAATGCAAGTGCTTTAAGATTAACTGTAAATGATGCCACAAGGTCTGCAACAGTTTATCACACACTTAATAAACCATCTCCTAATGAATTAGGTATGAGAACTAATACTGAAAATGATGCAAGATATGCTATGAAGGAAACTGAAAATACCTTCTTGGCAAGACAAATCATTAATATCAACGGTGTTGGTTTAACACTTAAAAGCATCTTACCAGATGGTGGAGCATATATTGAAGCAAGAGATTCAAATAATGCTTTGAGATTCACAGTTGGTAACTTGACTTCTGGTACTGATGTTACATTAGTTAACAGCAAAGGTGCTACGTTGACTCTTGGTACAAACTCTGTTAGTGTTGACAAGAACTTTGAAATCAATGGTCAGGTTCAGCCTAATAACTGGAACAACCTTGATGCAAGATTCTTTACACAGACTGCTGCTGACCAGAGATTTGCAAGACTTAATGCAAGTAATAACTTTGTTGGGGTTAACAACTTCAACGGGAAGACTTATGTTATTGCAGATAGAAATGCACTTAACTTAAGAGCGGCTACAGAGAATGCTGCATTATTTATGCGTGGTTACAACAGTGCTGGGACAGGTGCTTGGTATGTGGGTCAACCAGATGGTACGCAGTCTGAGATTGTTTTAGCAAACCAGATGACAAATGTTAACTTGAAAATTGCTACAGAGTTTTCATTTAACAAAGCTATTAATGTATCTGGTCAGGTAAAACCAAGTGACTTTGCAAACTTTGATACAAGATATGTTCCAAGCTCTTTAACGAACGTTCTTGCAAGAACTAATGCTGCAAACGTTTTTACTAACCCACAAACTATTGTTACTACAGATGCGGCTTTCACATTGCAAAGTGGGACAGCTAATTCACCACTGTATATTGTTGGTGCTAATGCAGACGGCAACAGACGTTGGTATGTTGGTAACGGTGAAGGTAGTAGACCAAATTCTCTATTCCTGTATAACTACTCAAGCGGTGGTGTTCAGTTAGAAATTGCTGATACTTTCATGTTCAACAGAAGTGTATCAGTAACCGGTCAGGTTCAGCCTACAGATTGGTCAAACTTTGACTCAAGATACTACACACAATCTGCTGCAAACTCAAGATATATGTTGTCTGGTGTATCTGGAACGGGAACCGAAGTCGGTGATGAAACAGGTGTTGCTTGGAATGCAAAAACAGGTTTGTACAATGTTACAAGTTCAAGTGGTGGTTCAACTCACTTAGTTTACCAAATGTACCTTGGGATTGGCGCATCCACACCTTCTGCACAGCTTAGGTTCGAATACAAAAATGGTGGAATCTACTATAGAACGGCAAGGGACAGTTTTGGTTTTGAAGAGTTTTGGTCTAAAATCTATACAGATAAGGCTAAACCTACACCTGCTGAACTTGGTGCTTACACCAAGGCTGAAGTAGACCAACGTATTGCCTCTGCGGTAACTGATTCTACAGACCTTAAGAAAGTGTATCCAGTTGGTATTGTGACGTTCTTTGCTTCTAATGTCAACCCAAATACAGCTTTCCCAGGCACTACTTGGACTTACTTGACAGAGGGTGCAAACAGAACCATTAGAATTGGTTCTGCAAATGGTTCCGATGTGAAAGGGCTTGGTGGTGCTGATACAGTTGCATTAAGTGTTGGTCATATCCCTGCGCACACTCACAGCTTCTCTGGAACAACCACTACCTTTGATTATGGTACTAAGTACACAGACGCTCAAGGTGCTCACGACCATGACAGAGGTAACATGGAAATCTCTGGTGACTTTGGTTTCTTCAGAAGTGACGCAAACAGCTTTTATACAGCAAGTGGGGCGTTTGCTATCTCAGGTTCACAAGCGTCTAGAGGTTACACTGGTTCACAGTTCACTTATGGTACACCAGTTAACTTCTACGCATCAAGAACTTGGACAGGAAGAACAAGTTGGGTAGGTGCTCACGGTCACGGTGTAGGTATTGGTGCTCACAACCATACATTCAGTGGTAACACTGGTGCAACTGGTTCTGGTGCAGCATTCAGTGTTCTTAACACTTACATTAAATTAATGGCTTGGGTAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
14982a3878ddd0745c4bf690b9cb630dac6baac276cecffbb14f49436987b393
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6800
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank