Protein

View in Explore
Genbank accession
YP_010669256.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MADINISELPLISLATNDDVFIINDANATTSQITWSQLQNSIQSLTGQVTFSQGSAESPSITFTGDLNLGVFSPGLDTLAFTTNGSERMRIDPSGNVAIGLSAPSNFSSNAYNLVVGNTASSDNGITVVSSTVDTGNLYFADGTGAGSEDAGQITYDHSDNHLHFSTVASERMRINAVGNVGIGTSAIKSNLHVRGGDSGITATPSGQSGIIVESGAAESGALQFYNAPGTNAYVNFGDSGSLDVGYIRYDHNDNKLSIQTLGSERLHLTSAGDLGLGVSPTNTVLDINNPASGSSSYTGVGVSSVIQSDVTLDFRYFRSTAGTQNTTFNLTSLYHFSATQGTFGGTSSVDSQYGFAVDSGMSGATNNYGFYSGLNQAANTYGFYAAGSADHYFNGDNFIVANGGTETARFSDGNLTVSKSVVFTGGSTAARPSPIAGLMRFNSDIASWEGYNGFSWGAIGGGATTTSSPPSNANEGDIWFDIDEGRTYIYYNDGDSNQWVEMNPSLNGGVANGSISTPQLADGAVTDVKILDLNVTNSKLATNSVSTTKIQDGSVTPAKLDRAYLTDAPTDGNSYVRRSGTWEPSISGASANSTFPTATAIGQQHYNTNDGRLYIVIEDAGSNLIWVDASPDSENALVFSGVNPPNSPENGNLWWDSELGRLFVYYVDDNGDGQWVEASPQVTGFTYDEASDTWETGSNLGVDGELLIGTDNTTDNLRLNAKMAIVNSGSGSTSHTGLMMTNYSSSSGVAPFLDFNKSRSDTDGGKTAVQAEDSLGFIVFRGTDGDEFHQAASIESYVDGTTGNNDLPGRLVFKTTADGASTPAERMRIDRNGKWYLDNVDLFDPTYLGQIRINNTGGLLFRNGSTSARYPLGFQNSAGTFVGSVSAGNSSTQFNTSSDYRLKENVVAITDGISRLKQLQPKRFNFIIEAGKTVDGFIAHEAQAVVPEAVTGEKDAVDDKGNPVHQGIDQSKLVPLLTAALQEAVAKIETLEARLNTLEEGLN
Physico‐chemical
properties
protein length:1004 AA
molecular weight: 105743,56810 Da
isoelectric point:4,35463
aromaticity:0,08765
hydropathy:-0,30020

Domains

Domains [InterPro]
DC_1386
STR
11–212
DC_1386 DC_1884 G3DSA:1.20.5.320 DC_1367
DC_0591
STR
506–716
DC_0591 IPR030392 Coil
IPR030392
CHP
899–996
IPR030392
YP_010669256.1
1 1004
Architecture
STR
STR
STR
RBD
STR 11-212 | STR 371-466 | STR 493-716 | RBD 717-1004
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669256.1
1 1004
Domain Start End Length (AA) Confidence
N-terminal 1 182 182 0,3765
Central domain 183 385 204 0,2516
C-terminal 386 1004 618 0,6485
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-182
Central
183-385
C-terminal
386-1004

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-N03
[NCBI] 		2718943 Uroviricota > Caudoviricetes > Pantevenvirales > Huanghaivirus > Huanghaivirus snothree
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669256.1 [NCBI]
Genbank nucleotide accession
NC_070959 [NCBI]
CDS location
range 147597 -> 150611
strand -
CDS
ATGGCTGATATCAATATCAGTGAACTTCCACTAATTAGTCTGGCGACTAACGATGACGTCTTTATTATTAATGACGCCAACGCAACCACCAGTCAGATTACTTGGAGTCAGCTGCAAAACTCCATCCAGAGTCTGACTGGACAGGTTACTTTTAGTCAGGGCTCTGCCGAGTCCCCTTCGATCACCTTTACCGGTGACCTAAACCTTGGTGTGTTTAGTCCTGGTTTAGACACACTGGCGTTCACCACGAACGGCAGTGAGCGCATGCGCATTGACCCCTCGGGTAACGTTGCGATTGGTCTGAGTGCCCCCTCGAACTTCAGCTCCAACGCTTATAACCTGGTTGTCGGTAACACCGCATCATCCGACAACGGTATTACTGTTGTTTCTTCCACTGTTGATACTGGTAACCTTTATTTTGCTGACGGAACCGGTGCTGGTTCCGAAGATGCTGGTCAGATTACTTACGACCACAGCGACAACCACCTCCACTTCTCCACTGTAGCTAGTGAGAGGATGCGTATCAATGCCGTCGGTAATGTTGGTATTGGCACCAGTGCAATCAAGAGCAACCTCCACGTTCGTGGCGGCGATTCCGGCATTACGGCCACGCCCTCGGGTCAGTCTGGAATCATCGTTGAAAGTGGTGCTGCTGAGTCAGGTGCTCTCCAGTTCTATAACGCCCCCGGAACTAACGCCTATGTAAACTTTGGCGATAGTGGCTCCCTGGACGTTGGTTACATTCGTTATGACCATAACGACAACAAGCTTTCCATTCAGACCCTTGGTTCTGAGCGTCTCCACCTGACTTCGGCTGGTGACCTTGGTTTGGGTGTTTCACCTACCAACACGGTTCTGGACATCAATAACCCAGCCAGCGGTTCCTCGTCCTACACTGGTGTTGGTGTTTCTTCTGTTATTCAGAGTGACGTAACTCTGGACTTCCGCTATTTCCGTTCTACTGCCGGAACACAGAACACCACCTTCAACCTCACAAGTCTCTATCACTTCTCTGCAACTCAGGGAACCTTTGGTGGCACTTCTTCTGTTGATAGTCAGTATGGTTTCGCTGTTGACTCCGGTATGTCCGGGGCAACCAATAACTATGGTTTCTATTCTGGTCTGAACCAGGCAGCAAACACTTATGGTTTCTATGCTGCTGGTTCTGCCGACCACTACTTCAATGGTGATAACTTTATTGTTGCTAATGGTGGAACTGAGACTGCGCGTTTCTCCGACGGCAACCTGACCGTTTCTAAGTCTGTCGTCTTCACTGGTGGATCCACTGCTGCAAGACCCTCACCAATTGCCGGTCTGATGCGCTTCAACAGCGACATTGCCAGCTGGGAAGGTTATAACGGTTTCTCTTGGGGTGCCATTGGTGGTGGCGCAACCACAACTTCTTCACCTCCCTCTAACGCCAACGAAGGTGACATCTGGTTTGACATTGACGAAGGTCGCACCTACATCTACTATAACGACGGCGACTCCAACCAGTGGGTTGAGATGAACCCCTCGCTGAACGGTGGTGTTGCCAACGGTTCTATCTCCACTCCTCAGTTGGCAGACGGGGCAGTCACCGATGTCAAGATTCTCGATCTGAATGTAACCAACTCTAAGTTGGCTACAAACTCGGTCTCCACTACTAAGATTCAGGACGGCTCTGTTACCCCAGCCAAGCTGGATCGTGCTTATCTGACTGACGCTCCCACTGACGGTAACTCCTATGTCCGTCGTTCTGGAACCTGGGAACCTTCCATCTCTGGCGCTTCAGCAAACAGCACTTTCCCAACTGCTACCGCTATCGGTCAGCAGCACTACAACACCAACGACGGTCGTCTTTATATTGTTATTGAAGACGCTGGTTCTAACCTTATCTGGGTTGACGCTTCTCCCGACAGTGAGAACGCCCTGGTCTTCTCTGGTGTGAACCCACCCAACAGCCCTGAGAATGGAAACCTGTGGTGGGACTCTGAGCTGGGCCGTCTGTTCGTTTATTATGTTGACGACAACGGTGACGGTCAGTGGGTTGAAGCTTCACCTCAGGTTACCGGTTTCACTTATGACGAAGCAAGCGACACCTGGGAGACTGGTAGTAACCTTGGCGTCGATGGTGAGTTGTTGATTGGTACAGACAATACGACAGACAATCTGAGGCTCAATGCCAAAATGGCAATTGTTAACTCGGGGTCAGGTTCGACTTCACATACTGGCCTAATGATGACCAACTACTCCAGTTCCTCTGGAGTTGCACCTTTCTTGGATTTCAACAAGTCGAGAAGTGACACAGATGGAGGCAAAACTGCCGTTCAAGCCGAAGATTCTTTGGGCTTCATTGTCTTCCGTGGAACTGACGGAGATGAATTCCACCAAGCCGCTTCAATTGAGTCCTATGTCGACGGCACAACTGGAAATAACGATCTGCCCGGCCGATTGGTTTTCAAAACCACCGCTGACGGCGCAAGCACCCCGGCTGAGCGGATGAGGATTGATAGAAATGGTAAATGGTATTTAGACAATGTTGATCTTTTTGATCCCACTTATCTTGGGCAAATCCGAATCAACAATACCGGGGGATTGCTTTTTAGGAACGGCAGCACGTCTGCAAGATACCCGCTTGGATTCCAAAATTCAGCAGGAACCTTTGTCGGCAGTGTCAGTGCTGGAAATAGCTCCACGCAGTTCAACACTTCTTCGGACTATCGACTGAAGGAGAACGTCGTTGCTATCACTGACGGCATCTCTCGTCTAAAGCAGCTCCAACCCAAGCGATTTAACTTCATCATTGAGGCAGGGAAAACTGTTGATGGATTTATCGCACACGAAGCACAGGCTGTTGTCCCCGAAGCGGTGACTGGGGAGAAAGACGCAGTCGATGACAAAGGTAATCCCGTTCACCAGGGCATTGACCAATCCAAATTGGTCCCCTTGCTGACAGCTGCATTACAAGAAGCAGTTGCTAAGATTGAGACCCTTGAGGCTCGCCTAAATACCTTGGAAGAAGGACTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b758a2efa4677d368a6c5580bc7c35843da2b34d8464bf8b600ecbd48c4cd548
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6422
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-N03 from the Huanghai Sea, China Jiang,T. 2019-04-04 — GenBank