Protein

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Genbank accession
XDG30793.1 [GenBank]
Protein name
sialidase family protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,85
Protein sequence
MSTFPATNSNEAVELIIDGGNQLHQIINEDATTEIQTESGPIPSVRKALADTFLFLEPIAWQNGSDETAFNQLRTFNSNTYWAPTATLSNPVPMGSTPVGDSNWKLAPVDVNREWILSELTQSQQAVVGGSIYPFDDSTLSNGDTVPAGITHIRAFIGGKESIVTFSPTAEGIVSNLSDFGATIGTTPVSFKQVFEDDYNSGDYCYSLMGKAFDSSDGAGDPFASWTHATVGYDKETNEFIIFYNTSSGHNINTNSVLLRRKFETSDAFSDAEIIASDKGNFSYKCQAAGIAANGDYVALIARFPWGAGESDATYVYRSVDKGLNWTSTQMLLGGTTPIIAYNGDVSGFLVTRTGRILTFGVEYDTYLTRIFYSDDNGVTWNQSSISGSPTDVTEPAWCDLGDGRLVCMARAAVRTGNTNQIIPAKFMKSSDNGLTWSEPIDSGSITNFTLSNGEMIPNYKTKTIEFIHHSRFTEEDNYSSILVSRATFDKAFEDKFSQQIRIGKLAAYTSLEDSTGDSGYVGAKAANNGVINAFFYTGKRTTAQISYMVATPKTKYNNNDRLIDFRTGESLTQQQELVNVTPIFENGAYNPKLPLAIESGFTQGSRRFTMGSIVLNLQAGSQQRESVRTSRSIHFNTVDYIYLDIDSFSGDGDVGIALYSSPTVNPSDPTENRILIDATKDAGRHVVDVTGINGVYYLHVVLTGTTSSSATISSFGLKRKDVNYPVYEQTFNRVAFNYGYGFLGRNGLITGGEFGTGTGTSDVSSFVEHGATSTTTGTRTRTLVFDDPIPAGITAVTAKMSLLVDNISGFDAGLALFTTKTPSSSTDGRVDSIFLDESGTLILNVPSQRPLYLHLVVNATGTGVSNSAYFNNIFYL
Physico‐chemical
properties
protein length:877 AA
molecular weight: 95053,03830 Da
isoelectric point:4,74847
aromaticity:0,10718
hydropathy:-0,22166

Domains

Domains [InterPro]
DC_0194
STR
1–646
DC_0194
IPR058969
ATT
7–106
IPR058969 G3DSA:2.120.10.10
cd15482
ENZ
246–512
cd15482
IPR011040
ENZ
259–441
IPR011040
IPR036278
STR
307–479
IPR036278
XDG30793.1
1 877
Architecture
ATT
STR
ATT 1-106 | STR 107-646 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDG30793.1
1 877
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,9874
Central domain 195 393 200 0,2961
C-terminal 394 877 483 0,7739
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-393
C-terminal
394-877

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage P018-4
[NCBI] 		3229728 Uroviricota > Caudoviricetes >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDG30793.1 [NCBI]
Genbank nucleotide accession
PP934186 [NCBI]
CDS location
range 13528 -> 16161
strand -
CDS
ATGAGTACTTTTCCAGCAACAAATAGTAATGAAGCAGTAGAGTTAATTATCGATGGTGGTAATCAATTACACCAGATAATCAACGAAGATGCAACTACAGAGATTCAAACAGAGTCGGGTCCGATACCGTCAGTTCGTAAAGCTTTAGCTGACACATTCTTATTCCTAGAACCTATTGCTTGGCAAAACGGTAGTGATGAAACTGCCTTCAATCAACTGAGGACGTTCAATAGTAATACCTACTGGGCACCTACAGCAACACTATCTAATCCTGTACCAATGGGATCTACCCCTGTAGGGGATAGTAATTGGAAATTAGCTCCAGTTGATGTTAACAGAGAGTGGATACTATCTGAATTAACACAATCTCAACAGGCAGTGGTAGGAGGTTCTATTTACCCTTTTGACGATTCAACTCTTTCCAATGGGGATACAGTTCCGGCAGGAATTACACATATTCGTGCATTTATTGGAGGTAAAGAAAGCATAGTTACCTTCTCACCTACCGCAGAAGGGATAGTTTCCAATCTTAGCGACTTTGGGGCAACTATTGGTACAACACCAGTGAGCTTTAAACAGGTTTTTGAAGATGATTATAATTCAGGGGATTACTGTTATTCGTTAATGGGTAAGGCCTTCGATAGTTCTGATGGAGCAGGAGACCCTTTTGCAAGTTGGACACATGCTACTGTAGGTTACGATAAAGAAACTAATGAGTTTATCATTTTTTATAATACCAGTAGTGGTCATAATATCAACACTAACTCTGTGTTGTTAAGGAGAAAGTTTGAAACCTCTGATGCGTTCTCGGATGCAGAGATTATTGCTTCTGATAAAGGAAATTTCAGTTACAAGTGCCAAGCAGCAGGTATCGCAGCAAATGGAGATTATGTTGCATTAATAGCCCGTTTCCCTTGGGGAGCAGGAGAATCAGATGCTACTTATGTATATAGAAGTGTAGATAAAGGGCTTAACTGGACATCCACACAAATGTTACTTGGCGGGACAACCCCTATTATCGCTTACAATGGAGATGTGTCAGGTTTCTTAGTGACCAGAACGGGGAGGATTTTAACGTTTGGTGTTGAGTATGACACTTATCTAACAAGAATTTTTTATAGTGATGATAATGGTGTCACATGGAACCAATCATCTATTAGTGGTTCACCAACAGATGTAACAGAACCAGCGTGGTGTGATCTAGGTGATGGAAGATTGGTTTGTATGGCTAGGGCAGCGGTGAGAACAGGAAACACCAATCAAATCATACCTGCTAAATTTATGAAATCTTCAGATAATGGTTTAACTTGGAGTGAGCCAATTGATAGTGGATCAATTACCAACTTCACCTTATCTAATGGTGAGATGATACCTAACTACAAGACCAAGACTATAGAGTTCATTCACCATTCACGTTTCACAGAAGAAGATAATTACAGCAGTATACTTGTAAGCAGGGCAACATTCGACAAGGCATTTGAAGACAAATTCTCCCAACAGATTAGGATTGGGAAATTAGCGGCTTATACCTCTTTAGAGGATTCTACAGGAGATAGTGGGTATGTAGGAGCTAAAGCAGCAAATAATGGAGTGATCAATGCTTTTTTCTACACAGGTAAAAGAACAACAGCTCAAATTAGTTATATGGTTGCAACACCCAAAACAAAATATAACAATAATGATAGGTTGATAGATTTTAGAACAGGAGAATCTCTAACTCAGCAACAAGAGTTGGTCAATGTAACCCCTATTTTTGAGAACGGTGCTTATAATCCTAAACTCCCTTTAGCAATTGAAAGTGGTTTCACACAAGGAAGTAGAAGATTTACTATGGGGTCTATTGTTCTTAACTTACAAGCTGGTAGTCAACAAAGAGAAAGTGTTAGAACATCAAGATCTATCCATTTTAATACAGTAGATTATATATACCTAGATATAGATTCATTCTCTGGTGATGGTGATGTTGGTATCGCACTGTACAGTTCTCCCACAGTAAATCCTTCAGACCCTACAGAAAACCGAATTCTGATCGATGCAACAAAAGATGCAGGTAGACATGTTGTAGATGTAACAGGTATTAATGGAGTATATTATTTACATGTAGTCCTCACAGGTACAACATCATCTTCTGCTACAATATCTTCTTTTGGGTTGAAAAGGAAAGATGTTAACTACCCAGTTTATGAACAGACATTTAACCGAGTAGCTTTTAATTACGGTTATGGGTTTCTAGGAAGGAATGGATTGATTACTGGAGGTGAATTCGGTACCGGAACAGGTACATCAGATGTTTCATCTTTTGTTGAACACGGAGCCACATCTACGACAACAGGTACTAGAACAAGAACTCTTGTATTTGATGACCCTATCCCAGCAGGTATCACAGCAGTAACAGCCAAAATGAGTTTACTTGTTGATAATATAAGCGGTTTTGATGCAGGTTTAGCATTATTCACCACAAAGACACCATCTTCATCTACAGATGGAAGAGTAGACTCTATATTTTTAGATGAAAGTGGAACTTTGATACTAAACGTACCTTCACAAAGACCTCTTTACCTCCATCTAGTTGTTAATGCTACAGGTACAGGTGTAAGTAATTCAGCTTATTTCAACAATATCTTTTATTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9387d24de7a938e272e68578598379fd6ec1cf9c18ef09b059757625a88de9ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6771
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50