Protein

View in Explore
Genbank accession
AUR86738.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATPGGLVDKQELIDAQLDTAHLGRVVNSKDASGAPINTSTNRTGGVNKTLDALEAEYLQAIRAAGGVSIGAWTVGVTTFAKYNEYAVYNGIPYKPRTSATLPYVAQGADPTVTPDAENVQPYQEITEGQVISLIESTFPNEVPKYTDVVYKALEFLSPFEQMIEGLSLNPIMLAVGSVIKTGGTTWKYEDSTGTITPENFRVFNAICILDFVRGEDFASDDYSPAIQRMLDILEQYSQDTQDSGAFQEKVELYFPDGDYLMKTPVVKNYRNFMRFTGTGRLKAHPTFSGGDYLMELIACSHIEIDGLQFDGNNYAAKSALRVSGDGFTGTKRNSTNIHWNDCFFYDFGATGTNGYVVDTLSPNGVPGDYSIDDSGFNNCIFLGSYGGAIRLASSEIKINGGKFSFIGVDGVNPVISLGNGTSLIMSGVVFTTCSSVHLGADNGASIGRISVTGCYNETTTSPLYAQSGGTCRGLEINGGYFSAPTNSDATFILFSGNCKGQLSMSGATFQRNGYKWIDLGDSGSYIGDVQTSTTSWLSYYPQVKNGSFTERKFAIQTTQNGDAKRLMEVKYDRLNGTKLQLFVGIIDDFTRLRFTSLTDALKYVDQSGYNECEIQVPAGSYDIDEPFSFSGKLSIVCAGSSNTTINITEDINVRGGDFRIQSASLTYTDRVIKNKNGVVELFGCNLTAATNSVFLIEHYSGVTTISSGDFLTSGSGVILDNALTSTGVVLYNATNFTNTNAVACASSTALCRVKVVSNNAPANGFWPRGAIQEDSEVNAGGVVQRINVTAGSSGDWKDIITAAI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 86479,34410 Da
isoelectric point:4,72232
aromaticity:0,10186
hydropathy:-0,14025

Domains

Domains [InterPro]
DC_1559
ATT
1–167
DC_1559 IPR011050 DC_1395
AUR86738.1
1 805
Architecture
ATT
STR
RBD
ATT 1-167 | STR 252-541 | RBD 542-805
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR86738.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 223 223 0,9963
Central domain 224 552 330 0,9733
C-terminal 553 805 252 0,3924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-223
Central
224-552
C-terminal
553-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.088.O._10N.261.46.A1
[NCBI] 		1881317 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio lentus
[NCBI] 		136468 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR86738.1 [NCBI]
Genbank nucleotide accession
MG592463.1 [NCBI]
CDS location
range 57699 -> 60116
strand +
CDS
ATGGCAACTCCCGGTGGCTTGGTCGACAAGCAAGAATTAATCGACGCACAACTCGACACGGCACACTTAGGTCGTGTCGTCAATTCTAAGGACGCTTCGGGCGCTCCCATCAACACGTCTACGAACCGTACAGGCGGAGTGAATAAAACACTCGATGCGCTTGAAGCAGAGTATCTGCAAGCGATCCGTGCTGCGGGGGGGGTGTCAATCGGTGCGTGGACTGTAGGGGTTACGACGTTCGCCAAGTACAACGAATACGCAGTTTATAACGGGATTCCGTACAAACCTCGAACATCCGCGACGCTCCCCTACGTAGCACAAGGGGCTGACCCTACCGTTACACCTGACGCAGAGAACGTGCAACCTTATCAGGAGATCACCGAAGGTCAGGTCATATCTTTAATCGAATCAACTTTCCCGAATGAAGTACCTAAGTATACGGATGTAGTTTACAAGGCTTTAGAATTCTTATCGCCTTTTGAGCAAATGATTGAAGGACTATCTCTAAACCCTATCATGTTAGCGGTTGGCTCAGTTATTAAGACCGGTGGCACGACTTGGAAGTATGAAGATTCAACAGGAACAATCACACCAGAAAACTTCCGAGTATTTAACGCCATTTGTATTCTTGATTTCGTTCGAGGTGAAGACTTTGCAAGTGATGATTATTCGCCAGCCATTCAAAGAATGTTAGACATCCTTGAGCAATACAGCCAGGACACTCAGGATAGCGGAGCGTTTCAAGAGAAGGTTGAGCTGTATTTCCCGGACGGCGATTACCTAATGAAGACGCCGGTAGTTAAAAACTACAGAAACTTCATGCGCTTCACTGGTACGGGTCGACTGAAAGCACACCCCACCTTCTCCGGTGGTGATTACCTAATGGAGCTTATCGCATGTTCTCACATCGAGATTGACGGGCTTCAGTTTGACGGTAACAACTACGCGGCAAAATCCGCGTTGCGCGTATCTGGCGATGGATTCACCGGAACCAAGCGTAACTCAACAAATATACACTGGAACGATTGCTTCTTTTACGACTTTGGCGCTACGGGGACTAACGGTTATGTAGTTGATACCCTTTCACCTAACGGCGTCCCTGGTGATTATTCAATTGACGACTCAGGGTTTAATAACTGTATATTCTTGGGGTCTTACGGTGGCGCGATTCGCCTTGCATCAAGTGAGATTAAGATTAACGGGGGCAAGTTTAGCTTTATCGGGGTTGATGGTGTTAACCCTGTAATAAGTCTAGGAAATGGTACATCCTTGATTATGAGTGGTGTTGTCTTTACTACGTGTAGCTCGGTACACCTAGGGGCTGACAACGGAGCCAGTATCGGAAGAATAAGTGTGACGGGCTGTTACAACGAAACAACAACGAGCCCCTTATACGCTCAAAGTGGAGGCACATGTAGAGGCTTAGAGATAAACGGAGGGTACTTCTCGGCACCGACTAACTCAGATGCGACATTTATTTTATTTAGCGGGAACTGTAAAGGACAGTTAAGCATGTCTGGTGCGACCTTTCAGCGCAACGGGTACAAATGGATCGACTTAGGGGATTCAGGTTCTTACATCGGTGATGTTCAGACGTCAACCACGAGCTGGTTAAGTTACTACCCGCAAGTTAAAAACGGCTCGTTTACGGAGCGTAAATTTGCAATTCAAACCACGCAGAACGGTGACGCTAAGCGTTTGATGGAAGTCAAATATGACAGGTTGAATGGAACCAAACTACAGCTTTTCGTCGGAATTATAGATGATTTCACACGCTTGAGATTCACCTCTCTAACCGATGCTCTCAAGTACGTCGATCAGTCTGGTTACAATGAATGTGAAATTCAAGTCCCTGCTGGGTCTTACGATATTGACGAACCGTTTTCTTTCTCAGGAAAACTAAGCATTGTTTGCGCAGGTAGCTCGAATACCACAATAAACATAACCGAAGATATCAATGTGCGTGGCGGTGATTTCAGAATACAGTCAGCTTCATTGACCTACACGGATAGAGTGATAAAGAATAAAAACGGAGTAGTTGAACTATTCGGGTGTAACCTGACTGCTGCTACAAACTCAGTATTCCTGATTGAACACTATTCAGGTGTGACTACTATAAGTTCTGGAGACTTCTTAACGTCGGGTTCTGGTGTTATTTTAGATAACGCCCTGACGTCAACGGGGGTTGTTTTGTACAATGCCACTAACTTCACAAATACAAACGCGGTAGCTTGTGCAAGCAGTACAGCACTGTGTCGAGTTAAGGTAGTCTCTAATAACGCTCCAGCTAACGGTTTTTGGCCTAGAGGCGCAATTCAGGAAGACAGCGAAGTTAACGCTGGGGGTGTTGTTCAGCGGATCAATGTTACGGCGGGGTCATCTGGTGACTGGAAGGACATCATAACCGCAGCAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0a53b495b660adfc28b6159b3a694ee5d7d18774e6fdebf70273553da2cb351
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7444
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank