Protein

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Genbank accession
AVD98992.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MAQSLEGTIQSLLQGVSQQIPRERQPGQLGAQLNMLSDPVSGIRRRPPAEIVWESNIDNPNLDSLYTEYVERGIDGRHLLINTSNGNWWLLSKNGKSIVNSGNDPYFVTTAGQTSIQTASIAGLTYILNTEMAPNTTVDNAGRIDPSTTGFFYIKTVAFQKRWEITVSWTGGFVSGYCNAADASHAESAEWISAPNVVKALVNGGVNSSGIGAAIRAAGGNISYFEGYIYISGLPNLVVSTSAGDTYAMASGQSRVHQEQDLPAQLPAEAHGAMCQVGTASAETAWYQYNYNTRTWSEVGAYGSITKITNMPRELAADDNIIAREWEGRLAGNDENNQDPGFIENGYITGIAAFQGRLVLLSGSVVDMSASGLYQRFYRSTVTSLLDTDRISISSASAQDSVYRTAIQFNRDLILFANSMQAVVPGSVVLTPTNASISITSTYECDSRVTPVMAGQTVIYPNKRNNSYAGILELIPSPYTASQYTTQDATVHLPRYIPGRVLQMQNSSVTNMAFVRMSGQRKGLLVYEFMWGGQDGGKVQSAWHQWTFPYNILSVQALEDEVFLYLQGPSPGNKLMILSMDPREGYNLGSEYTDAYADLQTPVIVSGGVLEVPVVLRPEGWADTYKEDLILTYPANSPMGPTEVGLQGIAGTNRLSVVRGVPDGQYILGRRYNSAFTLTTPVLRDQNDKLVGSGHVRLLRLDVAVRNSGHFDVHVTDTPRDVDWSGELTGILMNSKELTLGQALRMDLATITVPCRTNADTTEITLYTKGSQELNVLDISYILRYNQRRRRI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 86605,16710 Da
isoelectric point:5,23239
aromaticity:0,08586
hydropathy:-0,21894

Domains

Domains [InterPro]
IPR058003
TTP
4–792
IPR058003
AVD98992.1
1 792
Architecture
TTP
TTP 4-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVD98992.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9920
Central domain 146 344 200 0,3541
C-terminal 345 792 447 0,1320
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-344
C-terminal
345-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SFN6B
[NCBI] 		1785176 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Drulisvirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVD98992.1 [NCBI]
Genbank nucleotide accession
KY684082 [NCBI]
CDS location
range 25762 -> 28140
strand +
CDS
ATGGCCCAGTCCCTAGAGGGTACCATTCAGAGTCTGCTCCAGGGTGTTTCCCAGCAGATTCCAAGAGAGCGCCAGCCTGGGCAACTAGGGGCGCAACTGAATATGCTTAGCGACCCAGTGTCTGGGATACGTAGACGTCCACCAGCAGAGATTGTGTGGGAGAGTAATATTGATAATCCTAACCTCGACTCCCTGTATACTGAGTATGTTGAGCGAGGCATTGATGGTAGGCACTTGCTGATTAACACCAGCAACGGTAATTGGTGGCTCCTGTCCAAGAATGGCAAATCCATTGTAAATAGCGGGAACGACCCGTACTTCGTAACAACGGCAGGGCAAACCTCTATCCAGACTGCTAGCATTGCCGGGTTGACCTACATCCTGAATACGGAGATGGCTCCGAATACTACTGTGGATAATGCCGGGCGCATTGACCCAAGCACTACGGGATTCTTCTACATCAAGACAGTAGCTTTCCAGAAGCGTTGGGAAATTACGGTATCCTGGACAGGCGGTTTCGTATCAGGCTATTGCAATGCCGCTGATGCAAGTCACGCCGAATCAGCAGAGTGGATTTCAGCGCCAAACGTAGTTAAAGCCTTAGTCAACGGAGGCGTTAATAGTAGTGGTATAGGGGCAGCTATTAGGGCGGCTGGTGGTAATATAAGCTATTTCGAGGGGTACATATATATATCCGGGCTACCTAATCTTGTAGTCAGTACGTCCGCTGGGGATACGTATGCTATGGCATCTGGGCAGAGTAGGGTCCACCAAGAACAGGATCTCCCTGCGCAGTTGCCGGCAGAGGCTCACGGTGCAATGTGCCAAGTAGGTACAGCTTCAGCTGAGACGGCGTGGTATCAGTACAACTATAATACTCGTACTTGGTCTGAGGTTGGAGCCTACGGCAGTATCACTAAAATCACTAATATGCCACGGGAACTGGCTGCGGACGATAACATCATTGCCCGTGAATGGGAGGGGCGTCTCGCTGGGAACGATGAAAACAATCAGGACCCCGGATTTATTGAGAACGGCTATATTACAGGTATAGCAGCATTCCAGGGCCGTCTGGTGCTGCTTAGTGGTAGTGTAGTGGACATGTCAGCCTCTGGGCTGTATCAGCGATTCTATCGCTCTACAGTAACTTCTCTGCTGGATACAGACCGTATCAGCATTAGCTCGGCATCTGCTCAGGATTCCGTGTACCGTACAGCTATACAATTCAACCGAGACTTGATTCTGTTTGCAAATAGCATGCAGGCTGTAGTGCCTGGGTCAGTAGTGCTTACTCCAACTAACGCCAGTATTAGCATCACTAGCACCTACGAATGTGACAGCCGAGTAACGCCAGTAATGGCTGGGCAGACTGTGATTTACCCGAACAAGCGCAACAACAGCTACGCGGGTATTCTGGAGCTTATCCCATCCCCGTATACTGCCTCACAATATACTACGCAGGATGCGACTGTGCACCTTCCTCGGTATATCCCTGGGAGGGTGCTGCAGATGCAAAACTCCAGTGTCACTAATATGGCGTTTGTGCGTATGTCCGGACAGCGCAAGGGTCTGCTGGTATATGAGTTCATGTGGGGTGGACAGGATGGTGGTAAGGTGCAATCAGCCTGGCACCAGTGGACATTCCCGTATAATATCCTGAGCGTGCAGGCGCTCGAAGATGAGGTGTTCCTGTACCTACAAGGGCCAAGCCCGGGCAATAAACTTATGATTCTGTCTATGGACCCACGCGAGGGGTATAATCTCGGTAGCGAGTACACGGACGCCTACGCGGACTTACAGACACCAGTCATTGTAAGCGGAGGGGTGCTAGAGGTGCCTGTAGTGCTGCGTCCAGAGGGTTGGGCGGATACCTACAAAGAGGACTTAATCCTTACCTATCCAGCCAATAGCCCCATGGGGCCTACTGAGGTGGGGTTGCAGGGTATCGCTGGCACTAACCGACTCAGCGTAGTGCGGGGTGTTCCTGATGGGCAGTATATCCTGGGTCGCAGGTACAATAGTGCATTCACTCTGACTACCCCAGTACTCCGGGATCAGAATGATAAGCTAGTTGGTAGTGGGCACGTGCGCTTACTGCGTCTGGATGTAGCAGTACGTAACTCCGGGCACTTTGATGTGCATGTAACGGATACGCCCCGGGATGTTGATTGGAGTGGAGAACTCACAGGTATCTTGATGAACTCCAAGGAGCTGACGCTGGGGCAGGCCTTGCGTATGGACTTGGCTACCATCACAGTACCGTGCCGTACTAACGCGGACACTACCGAAATCACTTTGTATACAAAAGGCTCCCAGGAGCTTAACGTGCTGGATATCTCTTATATCCTGCGCTATAACCAACGCAGACGGAGAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ffeb4dc4c1535d1d4d3c98adfffb3e3a4554de63819879d21023e62a84f367b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8615
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Shigella flexneri specific phage SFN6B Sia,S.C. and Tan,G.C. 1988-01 — GenBank