Protein

View in Explore
Genbank accession
YP_007673203.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,63
Protein sequence
MTIAEIVGRALPAARDRDLRQARVALVTEHGSALISREYWHCVRPNPGVRVVIRVVPAEGALKAVLSIVVTVAAVALGAVWGPALAGALGVSTAIGTALVIAGVSIVGNLLINALIPPVKPDNEKRNSYSINGLRNRLDPDGAVPFVLGKMRYAPPYAATPYTEIVGDDQYIRALFCFGEGELQITDMRLGETSLAEYDEVETEVRYGIAGELPCSLYPRQVVEEQIGVELTRPLPRDDNGDVISGQPTEDVPVVRTTGADASGATVIFAWPAGLVQFNDKGSKRTRAVSIRIEHRLAEADQWQLVDTLNITAKKAEGFYRQYSWDFPTRARWQVRVTMLTDESDSSNVQQRTTWVALQTLRPEYPLDYPRPLALVALRIKATHQLNGQLDNFNALVGRVCPDWDAASGTWVRRSTERPASLYREILQHASNPKAVADAGIDLDLLAEWHEHSEANSLTYNRVLEGTDTTLRDILTEVAAAGRATPRHDGQKWGVVIDRPSRDDLIVDHLNPRNSWGFKWSRSYTDAPDAFVVKFHDAGNDYKETQRIIPWPGHVGAVEITEELSLPGKVYADEVWREARRRQLETIYRPDTFEATQDGSARVVTRGDAIALSHYVLSRVQSAARVRNVSGRVIELDETVTMAAGTSYAIRFRVFDGPSDTIGRSVVREAITVAGESPLLTFVGDSNLPQVGDLVHFGPVASESYQQIVTGIEITEDMCSIVRTVDAAPEIDEELAATVVPAWSSRVGAELDENLLQPSAPRFVSIVSGVDGTDIADLIVYLIEPGSGAVPTSEFDIEHKSNGTATWTSSRLPIANGGGQITGYSNGNIVDIRARGVSATGIPGPYTPTITITVGGADASIPAALDSEAVNITPVLGGVTIEIATGDDPAIASLQLYRSQTEVLDRETDASGAPISAAPLRSFSASMGDTTRQILIGDGAMDGAGSWTLGAGWTIGSGSATHAPGSAGALSQPLTTESGKYYRVAVTVSGRTAGTITPKLTGGSDRSGVSITTDGIHSDRIQAVTGNDTFELVASADFDGSVEDVVVYLETAACLTQGDHHIWVEPQNSDGVPGPVSGPFTATVL
Physico‐chemical
properties
protein length:1085 AA
molecular weight: 116370,96770 Da
isoelectric point:4,88084
aromaticity:0,06544
hydropathy:-0,12323

Domains

Domains [InterPro]
DC_0129
STR
1–933
DC_0129
IPR055385
ATT
249–362
IPR055385
NF040662
Unmapped
262–718
NF040662
YP_007673203.1
1 1085
Architecture
STR
ATT
STR
STR 1-248 | ATT 249-362 | STR 363-933 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacter phage RC1
[NCBI] 		754055 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacter sp.
[NCBI] 		1062 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Rhodobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673203.1 [NCBI]
Genbank nucleotide accession
NC_020839.1 [NCBI]
CDS location
range 2254 -> 5511
strand -
CDS
ATGACGATCGCCGAGATCGTCGGTCGGGCATTGCCGGCCGCGCGCGATCGAGATCTTCGCCAGGCACGCGTGGCGCTCGTGACAGAGCATGGATCCGCTCTGATCTCGCGCGAGTATTGGCATTGCGTCCGTCCGAACCCCGGCGTGCGAGTCGTCATTCGGGTGGTTCCGGCCGAAGGCGCCCTCAAGGCGGTCCTGTCGATCGTGGTCACGGTCGCGGCGGTTGCCCTGGGCGCCGTATGGGGGCCCGCCCTTGCAGGCGCCCTCGGAGTTTCGACCGCGATTGGAACCGCTCTGGTCATCGCCGGCGTCAGCATCGTCGGCAATCTCCTGATCAATGCGCTGATCCCGCCTGTGAAACCGGATAACGAGAAACGGAACAGCTATTCGATCAACGGTCTGCGCAACCGCCTCGATCCTGACGGGGCTGTCCCGTTCGTGCTCGGCAAGATGCGCTACGCGCCCCCTTACGCGGCAACGCCCTACACCGAGATCGTGGGCGATGATCAGTATATCCGGGCTCTGTTCTGCTTCGGAGAAGGAGAGCTTCAGATCACGGATATGCGCCTCGGCGAAACCAGTCTCGCGGAATACGACGAGGTCGAGACCGAGGTGCGCTACGGGATCGCGGGCGAGCTCCCCTGCAGCCTCTATCCCCGCCAGGTCGTCGAAGAGCAGATCGGCGTTGAACTCACGCGCCCCTTGCCGCGCGACGACAACGGCGACGTCATCAGCGGTCAGCCGACGGAAGATGTCCCGGTCGTGCGCACCACCGGGGCGGATGCATCCGGCGCGACCGTGATCTTCGCCTGGCCGGCTGGTCTCGTCCAGTTCAACGACAAGGGCAGCAAACGCACGAGAGCCGTCAGCATCCGGATCGAACATCGTCTGGCCGAGGCCGATCAGTGGCAACTCGTCGACACGCTCAATATCACCGCGAAGAAGGCTGAGGGCTTCTACCGACAGTATTCATGGGATTTTCCGACGCGCGCGCGCTGGCAAGTGCGCGTGACCATGCTGACCGACGAGTCCGACAGCAGCAACGTCCAGCAGAGAACGACCTGGGTGGCGTTGCAGACCTTGCGGCCGGAATACCCGCTCGATTACCCGCGTCCGCTTGCCCTGGTGGCGCTGCGCATCAAGGCGACCCATCAGCTCAACGGACAGCTCGACAACTTCAATGCCCTGGTCGGCCGCGTTTGCCCCGACTGGGATGCTGCGTCAGGAACCTGGGTGCGCAGAAGCACCGAGCGGCCCGCTAGCCTTTATCGCGAGATCCTCCAGCACGCATCGAACCCCAAAGCCGTCGCCGATGCCGGCATCGATCTCGACCTGCTCGCCGAGTGGCATGAGCACAGTGAGGCGAACTCCCTCACCTATAACCGCGTCCTCGAGGGAACCGACACCACTCTGCGCGACATCCTCACCGAGGTCGCGGCCGCTGGGCGGGCCACGCCGCGCCATGACGGCCAGAAATGGGGCGTCGTGATCGATCGTCCAAGCCGGGATGATCTGATCGTCGACCATCTCAACCCGCGCAACTCCTGGGGCTTCAAGTGGAGCCGAAGCTATACAGATGCGCCGGATGCCTTCGTCGTGAAGTTTCATGATGCGGGCAACGACTACAAGGAGACCCAGCGGATCATCCCCTGGCCGGGCCATGTCGGGGCGGTCGAGATCACCGAAGAGCTGAGCTTGCCCGGAAAGGTCTATGCGGACGAGGTCTGGCGTGAGGCACGCCGACGTCAGCTGGAGACGATCTATCGCCCCGACACGTTCGAGGCCACCCAGGACGGCTCGGCGCGTGTCGTCACCCGCGGAGATGCGATCGCGCTCAGCCATTACGTGCTTTCTCGGGTGCAGAGCGCCGCACGCGTGCGCAATGTTTCTGGACGGGTGATCGAGCTCGATGAAACGGTCACGATGGCGGCGGGAACCTCCTATGCGATCCGGTTTCGGGTGTTTGATGGGCCCTCCGATACGATCGGCCGATCGGTGGTGCGTGAAGCGATCACCGTTGCCGGAGAGAGCCCGCTGCTCACCTTCGTCGGCGACAGCAACCTGCCCCAGGTCGGCGATCTGGTTCATTTCGGGCCGGTCGCAAGCGAAAGCTACCAGCAGATCGTCACCGGAATCGAGATCACCGAAGACATGTGCTCGATCGTGCGCACCGTGGACGCGGCCCCTGAGATCGATGAGGAGCTCGCTGCAACGGTCGTGCCGGCATGGTCGAGCCGCGTTGGGGCGGAACTCGACGAGAACCTTCTGCAGCCCTCCGCGCCACGCTTCGTGTCGATCGTCTCCGGGGTCGATGGGACGGATATCGCGGATCTGATCGTCTATCTCATCGAGCCTGGGTCAGGCGCCGTTCCGACCTCGGAATTCGACATCGAACACAAGTCGAACGGAACCGCGACTTGGACTTCCTCGCGCCTGCCGATTGCCAATGGGGGCGGGCAAATCACGGGTTACTCGAACGGTAATATCGTCGACATCCGGGCTCGGGGCGTCAGCGCAACAGGCATTCCGGGCCCCTATACCCCCACGATCACGATCACGGTCGGCGGCGCGGATGCGAGCATTCCTGCGGCTCTCGATTCCGAAGCGGTCAATATCACGCCCGTCTTGGGCGGCGTCACGATCGAGATCGCCACCGGCGACGACCCGGCGATTGCCAGCCTCCAGCTCTACCGGTCGCAGACCGAGGTTCTCGACCGGGAGACGGATGCTTCCGGCGCGCCGATCTCTGCGGCCCCGCTGCGCAGCTTCTCCGCATCCATGGGGGACACGACGCGACAGATCCTCATCGGCGATGGCGCCATGGATGGGGCCGGCTCCTGGACGCTCGGCGCCGGTTGGACGATCGGCTCGGGCAGCGCAACGCATGCGCCGGGTTCGGCAGGCGCGCTTTCGCAGCCGCTGACGACCGAGTCCGGGAAGTACTACCGCGTCGCCGTCACCGTGTCCGGCCGGACAGCGGGGACGATCACGCCGAAGCTGACAGGCGGCTCGGATCGGTCCGGGGTTTCGATCACGACCGACGGGATCCATTCGGACCGCATTCAGGCCGTCACCGGCAACGACACGTTCGAGCTGGTCGCCTCGGCCGATTTCGACGGGTCGGTCGAAGATGTGGTCGTCTACCTCGAGACCGCGGCCTGCCTGACACAGGGCGACCATCATATCTGGGTCGAGCCTCAGAACTCCGACGGGGTTCCCGGCCCGGTTTCCGGCCCATTCACTGCAACCGTTTTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa681091d3c828800da1599c054d84fa234ad588c5f152c071075de2b7b1c63a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8681
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Rhodobacter phage RC1 Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank