Protein

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UniProt accession
A0A8S5PIS1 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,89
Protein sequence
MVNNDTNFKSIELLRCWCMKSLPTVFSDALSYNQQVCLLTKAINDMANTINGLPDYIIELVKELLDQLGLEEIVKEVLADLYFLNVKNPPNNMTAAVGDGVTDDTAAIQTMISYLNGKRAYLFFPAGIYSVTGLNVTTNMCLVGLDRYQTTLQLRAGSNKDLLIGDLGSCTINDITLDANMPGQTQNCSVFDGNVGNMLVSNVIFKNGYNVLSIDVNGLVQMDNIVFDGVQGNGLSIGGDRAVINDIQFVNNSTLNTGTLITVSSNNSMITGLLNTGRCETGLNVSGNNNVIIGVIRGATTPIVNAGTDNYIDIVGGVHTVIDGAYTHTMAGDFTSNMNSKHETVRGDKTEIVNGDNLETISGTNTISSGNKTETISGTNTISSGNKTETITGSSSKTVTTNDTENVTGTKEIQAGDIFLNPVNPLKYGEVKTADNIKYIDMLDKNNQPYKLLSDITITERVTPIVLYPVTLGITSPETYSAQGFTMDDTFFYQAFTNTAKNNAYLRKISIADNTFTDTNLNLDSNANSLAVDDNYLYVLTTKTKDTNKMYTLNKSTLTIVSEITPSVYLSGISVDKVTGKLYGVSYDTNGIYEINNGATTLIQNFTPKYNSSNQGLGVYNGVAYIPFSFPKMCYKVNLETGITEPLYLPDNNFITYIIETEDICFDSDGEMYLSSAMYTIDGYYTISTTKNTAFALSELVTVEVKKS
Physico‐chemical
properties
protein length:708 AA
molecular weight: 76937,58610 Da
isoelectric point:4,46086
aromaticity:0,08051
hydropathy:-0,11271

Domains

Domains [InterPro]
DC_1947
ATT
1–144
DC_1947 SSF101898
IPR012334
STR
93–418
IPR012334 SSF101898
IPR011050
STR
96–416
IPR011050
IPR024535
ENZ
96–293
IPR024535
A0A8S5PIS1
1 708
Architecture
ATT
STR
RBD
ATT 1-144 | STR 145-418 | RBD 499-677 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5PIS1
1 708
Domain Start End Length (AA) Confidence
N-terminal 1 103 103 0,9789
Central domain 104 478 376 0,9172
C-terminal 479 708 229 0,2140
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-103
Central
104-478
C-terminal
479-708

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ctHkH8
[NCBI] 		2825236 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE06084.1 [NCBI]
Genbank nucleotide accession
BK015426 [NCBI]
CDS location
range 1 -> 2124
strand -
CDS
ATGGTAAATAATGATACAAATTTTAAATCGATAGAGCTGCTGAGATGTTGGTGCATGAAGTCCCTGCCTACAGTGTTTAGTGATGCGTTAAGTTATAATCAGCAGGTGTGCCTACTGACCAAAGCTATTAACGATATGGCAAATACTATTAATGGGTTGCCGGATTATATTATTGAGTTAGTAAAAGAGTTGCTTGACCAGCTGGGCTTGGAAGAAATTGTTAAGGAAGTTCTTGCAGATCTTTACTTCTTGAACGTAAAGAATCCCCCAAATAACATGACTGCGGCTGTGGGTGATGGGGTTACGGATGATACGGCGGCTATTCAGACTATGATTAGTTATCTGAATGGTAAAAGAGCATATTTGTTCTTCCCTGCTGGAATATATTCGGTTACTGGTCTTAATGTAACTACTAACATGTGTTTGGTAGGGCTTGATAGATACCAGACTACATTACAGTTGAGGGCTGGTAGCAATAAAGACCTGCTTATTGGGGATTTAGGTTCTTGCACAATTAATGACATTACGCTTGATGCTAATATGCCGGGTCAGACACAAAATTGCAGTGTGTTTGATGGAAATGTTGGAAATATGTTGGTTAGTAATGTTATCTTTAAAAATGGATACAATGTTTTGAGTATTGATGTTAACGGTTTAGTTCAGATGGATAACATTGTGTTTGATGGTGTTCAGGGCAATGGACTGAGTATTGGGGGAGACAGGGCTGTTATAAATGATATTCAGTTTGTAAATAACTCTACACTTAACACTGGAACTTTGATTACTGTATCTAGTAATAACAGTATGATTACCGGGTTGTTGAATACTGGCCGGTGTGAAACTGGATTAAACGTGTCGGGTAACAATAATGTTATCATTGGAGTTATTAGAGGTGCTACTACTCCTATTGTTAACGCGGGTACTGATAATTATATTGATATTGTCGGTGGCGTTCACACTGTAATTGATGGAGCTTATACTCACACCATGGCTGGTGATTTTACCTCTAATATGAACTCAAAACACGAGACTGTGCGTGGGGATAAAACGGAGATTGTCAATGGTGATAACCTTGAAACTATCAGCGGGACTAATACTATTTCATCAGGCAATAAAACTGAAACTATCAGCGGGACTAATACTATTTCATCAGGCAATAAAACTGAAACGATTACTGGGTCATCAAGTAAAACAGTTACAACTAACGATACTGAAAACGTTACTGGAACAAAAGAGATTCAGGCTGGTGACATTTTCTTAAATCCTGTTAACCCTCTTAAATACGGAGAAGTAAAAACTGCTGATAATATAAAATACATTGACATGTTAGACAAAAACAATCAGCCCTATAAATTACTTTCAGACATTACTATAACAGAACGCGTTACTCCTATTGTGCTTTATCCCGTTACCTTGGGTATTACTAGTCCAGAAACTTATTCCGCACAAGGATTTACTATGGACGATACATTCTTTTATCAAGCGTTTACAAATACAGCAAAAAATAACGCGTATTTAAGAAAAATATCTATCGCTGATAATACCTTTACAGATACTAATCTAAATTTAGACAGTAATGCCAATTCTTTAGCTGTAGATGACAACTATTTATACGTGCTTACAACAAAAACTAAAGATACAAATAAAATGTACACGTTAAATAAAAGCACTCTAACTATAGTCTCAGAAATAACGCCTAGTGTATATTTATCCGGCATTAGTGTTGATAAAGTGACAGGCAAATTATATGGAGTATCATATGATACTAACGGAATATATGAAATTAATAACGGAGCAACCACATTAATCCAAAACTTTACCCCTAAATATAATTCATCAAACCAAGGATTGGGCGTTTATAATGGTGTTGCGTATATTCCATTTTCATTTCCTAAAATGTGTTACAAGGTGAATCTGGAAACTGGAATAACTGAGCCGCTATATTTGCCAGATAATAACTTCATAACCTATATAATAGAAACTGAAGATATTTGTTTTGATTCTGACGGAGAAATGTATTTATCAAGCGCAATGTATACAATAGATGGATATTACACAATATCTACTACTAAAAATACAGCGTTTGCATTATCAGAATTAGTTACAGTTGAGGTTAAAAAGTCA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
fcb7599bb9e8fa5212704dc625ebbdd281438a4e1dd2cba60a6df288423a6c85
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7863
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50