Protein

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Genbank accession
WPK38098.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSNFLKVAGIYKHFSSFYEMIASTEEELPVDSVCSTGGTMWVRSATQPALTSFTPISAICGDDFGITAGGSVPGQTISDFLTVAYTSGCRGYFKSVGEVTVTSSIELLSIDKNLVVDWSGIKLFGASDGVEMHLSSTEIQSSLLADMDRGSTVVRVAGAVEGDLIYIEDNEKYETQWGFNSRELFIAERESGSDMKIDRPSLFRHLIANNVKVNRYKPVRLIFNNFKMEHFNNRDNSSFVNVGSVSFGTSSSWFRGFYMPVFSGDVETSGGSSYSLIACYMPRVGNVVANRCQYPISPAAGTYDTVIESITATFCRHAAAPTTWFNKFEVKKCFGYNNFATMDSHAGFDAKWRNVFATEEQDMPNIRCIGGEITDINIVASLGTTPAEDPQIGLVTFTGDASMYRDWIATNVTLNYKNRTDDIFALPWQADNVYYENINCMGGFIRCANTASKIKTVTLTNINASVRLVGNCGNLKTLINNRVIPDGSFYMYENAPNAKRTTLWEVNCGHTSGASANKVLKIFDNYGTSESQNLLVKVKSCSSYNNGGSVAYIEKTYLVNHKLSANSSASISGPVNETRINGVTDSDISLNVTLTNSAGYTQSPDINAHFFELTIATATSRPNNVFGITVEISKLN
Physico‐chemical
properties
protein length:668 AA
molecular weight: 73049,07640 Da
isoelectric point:5,38466
aromaticity:0,10180
hydropathy:-0,15659

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK38098.1
1 668
Domain Start End Length (AA) Confidence
N-terminal 1 104 104 0,9700
Central domain 105 533 430 0,9864
C-terminal 534 668 134 0,9671
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-104
Central
105-533
C-terminal
534-668

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV126
[NCBI] 		3077271 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38098.1 [NCBI]
Genbank nucleotide accession
OR352956.1 [NCBI]
CDS location
range 22999 -> 25005
strand +
CDS
ATGTCAACTACAATTACTAATTTACCCGAAACATCAAAAGTTAATGGTTCTGATTACCTGGTTTTAGACCAACCTGATAAGACTGTTAAAAGCACAGTTTCCAACTTTCTTAAAGTTGCTGGAATATACAAGCATTTCTCCTCTTTTTACGAGATGATTGCATCCACGGAGGAAGAGTTACCTGTAGATTCAGTATGCTCAACCGGCGGCACAATGTGGGTTAGGTCTGCTACTCAGCCGGCATTAACATCCTTTACCCCTATAAGTGCGATTTGCGGAGATGATTTCGGCATAACCGCTGGAGGGTCTGTCCCTGGCCAGACCATATCTGATTTCCTAACTGTAGCTTACACATCTGGGTGCCGTGGGTACTTCAAGTCAGTCGGTGAAGTTACTGTAACCAGCAGTATAGAACTATTGTCGATTGATAAAAACTTAGTTGTTGATTGGTCTGGCATAAAGCTGTTCGGGGCCTCTGATGGGGTGGAAATGCACCTGTCATCAACCGAGATTCAGTCTTCACTTCTTGCTGATATGGATCGTGGCTCTACAGTTGTGCGGGTGGCCGGGGCTGTAGAGGGTGATTTGATTTACATAGAGGATAACGAGAAGTACGAGACTCAGTGGGGATTTAACTCCAGGGAGTTGTTTATTGCAGAGCGTGAGTCTGGTTCTGATATGAAAATTGATCGACCTTCCCTTTTCAGGCACTTGATCGCAAACAACGTTAAGGTGAACAGGTACAAACCAGTAAGGTTGATTTTCAACAACTTCAAGATGGAGCATTTCAATAACCGTGATAACTCATCTTTTGTGAATGTAGGCTCCGTGTCATTCGGGACTTCATCTTCGTGGTTTCGCGGTTTTTATATGCCTGTTTTTTCTGGTGACGTGGAGACTAGCGGCGGTTCTTCATACTCATTGATAGCTTGCTACATGCCGAGGGTTGGTAATGTAGTTGCTAATAGGTGTCAATACCCTATTAGCCCAGCAGCAGGCACTTATGACACAGTTATTGAGAGCATCACAGCAACATTCTGCCGACATGCTGCCGCTCCAACAACTTGGTTCAATAAGTTTGAGGTTAAAAAGTGCTTCGGCTACAACAACTTCGCCACGATGGACTCCCACGCGGGTTTTGATGCTAAATGGCGTAATGTGTTCGCAACGGAAGAACAAGACATGCCGAATATAAGATGCATTGGTGGTGAGATTACCGATATCAATATAGTTGCCAGCTTAGGTACAACCCCTGCGGAAGACCCCCAGATAGGTCTCGTTACATTCACTGGTGATGCTTCTATGTACAGAGATTGGATTGCCACTAATGTTACGCTCAATTATAAGAACCGAACCGATGATATTTTCGCATTACCATGGCAGGCTGATAATGTCTATTACGAAAATATTAACTGCATGGGGGGCTTTATTAGATGCGCAAACACAGCATCAAAAATAAAAACAGTAACATTAACAAACATCAATGCCAGCGTGAGACTGGTAGGTAACTGCGGAAATCTGAAAACATTAATAAACAACAGGGTAATTCCAGATGGTAGTTTCTACATGTATGAGAATGCACCGAACGCGAAGAGAACTACATTATGGGAAGTTAACTGTGGGCATACTTCGGGGGCGTCTGCTAACAAAGTTTTAAAGATTTTTGATAACTATGGAACATCAGAATCACAAAACCTACTAGTAAAAGTTAAGTCGTGCTCTTCATATAATAACGGAGGATCCGTTGCTTATATTGAGAAGACGTACCTAGTAAATCATAAGCTCAGCGCGAACTCTTCCGCGTCGATATCAGGACCTGTGAATGAAACTCGCATAAACGGCGTGACAGATTCGGACATATCACTCAATGTAACATTAACTAATTCTGCGGGATACACACAGTCACCAGATATAAACGCGCATTTCTTTGAGCTAACTATAGCTACAGCCACAAGTAGACCGAATAACGTATTCGGTATAACTGTAGAGATATCAAAACTCAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c4f8a2c04d6567bfdbfbca38c8a0720e1762069657f292d2d5a13160aa3119f2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7371
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank