Protein

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Genbank accession
QSH71726.1 [GenBank]
Protein name
constituent protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNPTGIVTDIAPTDLPLDKWSFGNNVRFKNGKAQKALGHSPIFDTAQAPILDMFPFIRNNIPYWLLCSEKRLYLADGTTIIDVSPGPYSASVTNRWSVGSFNGVIFANDGVNPPHHLPPTESVFRVLPNFPANTTFRRLKSFKNFLVGLNVTSNSIEMPQMVWWSTSADAGGVPASWDPTDPTKDAGQNTLADTNGAIVDGVKLRDSFIIYKEDSVYSMRYIGGLYIFQFQQLFNDVGILGPNCAIEFDGNHFVVGHGDVYVHNGVQKQSVIDAQVRKFFFSDINPDNYQRTFVLADHVNTEMWVCYSSTRSEPGKHCDRAIIWNWKENTWSIRDLPNVLSGAYGIIDPKTSNLWDDDSNPWDTDTSVWGEGSYNPAKSSMIFTSFQDAKLFLFGETSTFSGQSFTSTLERSDIYLGDDRMMKTVSAVIPHITGNGVCNIWVGNAQVQGSGIRWKGPYPYRIGQDYKIDTKHVGRYIALKFDFASAGDWYFNGYTLEMAPKAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57444,89170 Da
isoelectric point:5,71268
aromaticity:0,12865
hydropathy:-0,30858

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QSH71726.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 404 404 0,7018
Central domain 405 502 99 0,1050
C-terminal 503 513 10 0,9952
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-404
Central
405-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_fHoPae04
[NCBI] 		2811507 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QSH71726.1 [NCBI]
Genbank nucleotide accession
MW329986 [NCBI]
CDS location
range 34204 -> 35745
strand -
CDS
ATGGCCCTAGAGAGACAAGAGGTCAAGAACCCAACGGGTATCGTGACTGATATTGCACCCACTGACCTGCCCCTGGATAAATGGTCCTTCGGGAACAACGTCCGGTTTAAGAACGGTAAGGCTCAGAAGGCTCTGGGCCATTCACCCATCTTTGATACTGCCCAGGCCCCTATCTTGGATATGTTCCCCTTCATTCGGAACAACATTCCATACTGGCTCCTGTGCTCAGAAAAGAGGCTTTACTTGGCAGATGGGACTACCATCATTGATGTGTCCCCAGGTCCATACTCTGCGAGTGTAACCAACCGGTGGTCTGTAGGTTCCTTCAATGGAGTTATCTTTGCTAACGATGGGGTTAACCCTCCCCACCACCTACCACCAACTGAGAGTGTGTTTAGGGTTCTACCTAACTTCCCAGCGAATACAACCTTTAGACGTCTTAAGTCCTTCAAGAACTTCTTGGTTGGCTTGAATGTAACGTCTAACTCTATTGAAATGCCCCAGATGGTCTGGTGGAGTACCTCGGCTGATGCTGGTGGTGTACCGGCCTCTTGGGACCCAACAGACCCTACCAAAGATGCTGGACAGAACACCTTGGCTGATACCAATGGTGCTATCGTGGATGGTGTGAAGCTTCGTGACTCCTTCATCATCTACAAGGAAGACTCTGTATACTCCATGCGATATATCGGTGGTCTGTACATCTTCCAATTCCAGCAACTGTTTAATGACGTAGGTATCCTTGGTCCTAACTGCGCTATAGAGTTTGATGGTAACCACTTTGTTGTAGGTCATGGTGACGTCTATGTCCACAACGGTGTACAGAAGCAGTCCGTGATTGATGCTCAGGTCCGTAAGTTCTTCTTCTCGGATATCAACCCGGATAACTACCAACGGACCTTTGTGCTAGCTGACCATGTGAATACTGAAATGTGGGTATGCTACTCCTCGACTCGATCTGAGCCTGGGAAGCATTGCGATAGGGCTATCATCTGGAACTGGAAGGAGAACACTTGGAGTATCCGAGACCTCCCTAACGTTCTCAGTGGAGCCTATGGCATCATTGACCCTAAGACTTCTAACCTCTGGGATGACGACTCCAACCCCTGGGATACCGATACGTCGGTCTGGGGTGAAGGTTCGTATAACCCAGCGAAGTCTAGTATGATCTTCACGTCCTTCCAGGATGCTAAGCTCTTCCTCTTCGGGGAGACTTCTACGTTCTCTGGACAATCATTCACGAGTACCCTTGAGAGATCCGATATCTACCTTGGGGATGACCGAATGATGAAGACCGTCAGTGCTGTTATACCTCACATCACAGGCAACGGGGTATGTAATATTTGGGTAGGTAATGCCCAGGTACAAGGCTCAGGTATCCGATGGAAAGGGCCTTACCCGTACCGTATTGGGCAGGACTATAAGATTGACACCAAGCATGTGGGCCGATACATTGCCTTGAAGTTTGACTTCGCCTCAGCAGGTGATTGGTACTTCAATGGATATACTTTGGAAATGGCCCCGAAGGCAGGTATGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cc5ff876f50f93240e853920d4d4929e924ef5907da7d422b3921a73a799b8b2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8928
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and genomic analysis of a lytic phage vB_PaeP_fHoPae04 infecting Pseudomonas aeruginosa Patpatia,S., Yilmaz,O., Ylanne,M. and Kiljunen,S. 2021-06-03 — GenBank