Protein

View in Explore
Genbank accession
QBO65391.1 [GenBank]
Protein name
putative tail collar domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGQVDGNVTINGLLRLNGDYVQTGGMTVNGPIGSTDGVTAKVFRSTQGSFYTRATNDTANAHLWFENTNGSERGVLYSKPQSENEGVITMRVRQGTAAGAQNSEFHFISTDGGIFQARKLTALTSISTPTISVNLINHDSKSFGQYDSQSLVQYVYPGTGETNGINYLRKVRAKSGGTIYHEIASSQTGKSDEISWWTGNTAVNKQMGLRNDGSLVLRRSLAIGTITTDENINNYGSAGAMGECYIVIGDASTGLSYKKTGVYDLVASGLSLASITPDSFRSTRKAIFGRSEDQGTTWIMPGTNAAFLSVQTQADENTAGDGQTHIGYNSGGKMNHYFRGKGKTNINTQEGMEVNPGILKLVTGSNNVMFYADGGITSVKQLSIYNGIYLAANNSTAGLTFAPTTTIDGTKQILWEGGTRAGQNKSYVTVKAWGNSFNASGDRNRETVFEVSDGQGYYFYSQRVAPSGSETTGPVVTQFNGQVNARGSIITDGSLRVNGLSTLSGQVTMDNGLVLSGGGSITGQVKIGNTADAFRIYNAEYGAIFRRSEASLHIIPTLKDAGESGGISNLRPLSVSLNNGMVQMRHSVTLGDDGAGGNMVTVDNDNKLVVITSHSRISPNYRMQLGQSAYIDAECTDTARPAGAGSFASQNNENVRAPFYMNIDRTDTSTYVPIVKQRYVQNNSCYSIGTLINGGNFRVHYHEGGDGVSTGAIIKDLGWEFNKNGDFYSPGKLGAGNVRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDAGLYPKLAAVYPSGALPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKNTSSFDYGSKTTSSFDYGTKTSNTTGNHNHTVSGNTSSAGAHQHARSGPQVTAAWADDLFRDGVTTIGANSYAKINSGITGSTLATKVGKTSNDGAHTHSWSGTTSSTGNHAHTVGIGAHTHSVGIGAHSHTVAIGSHGHTITVNATGNTENTVKNVAFNYIVRLA
Physico‐chemical
properties
protein length:1075 AA
molecular weight: 113408,80380 Da
isoelectric point:8,47716
aromaticity:0,07628
hydropathy:-0,37684

Domains

Domains [InterPro]
DC_0538
STR
1–1073
DC_0538
IPR051934
Unmapped
717–1075
IPR051934
SSF88874
STR
816–946
SSF88874 SSF88874
IPR037053
ATT
823–876
IPR037053
IPR011083
ATT
828–875
IPR011083
QBO65391.1
1 1075
Architecture
STR
ATT
STR
STR 1-822 | ATT 823-876 | STR 877-1074 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBO65391.1
1 1075
Domain Start End Length (AA) Confidence
N-terminal 1 289 289 0,1400
Central domain 290 488 200 0,3943
C-terminal 489 1075 586 0,8198
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-289
Central
290-488
C-terminal
489-1075

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_G53
[NCBI] 		2502416 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBO65391.1 [NCBI]
Genbank nucleotide accession
MK327943 [NCBI]
CDS location
range 155326 -> 158553
strand +
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGACCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGCAAGTTGACGGCAACGTTACTATTAACGGACTTTTGAGATTAAATGGCGATTATGTACAAACAGGCGGAATGACTGTAAACGGACCTATTGGTTCTACTGATGGCGTAACTGCAAAAGTTTTCAGATCTACACAGGGTTCATTTTATACAAGAGCAACAAACGATACTGCAAATGCCCATCTTTGGTTTGAAAATACAAATGGCTCAGAACGTGGTGTTTTATATTCAAAACCGCAGTCTGAAAATGAAGGCGTAATTACAATGCGTGTTCGTCAAGGAACCGCTGCGGGAGCTCAAAATTCAGAATTTCATTTCATTTCTACCGATGGCGGTATCTTCCAGGCACGCAAATTAACTGCTTTAACTTCTATTAGTACACCAACTATTAGTGTTAATTTAATTAATCATGATTCTAAATCATTTGGACAATACGATTCGCAGTCATTAGTTCAATATGTTTATCCTGGAACCGGTGAAACAAACGGAATCAATTACCTTCGTAAAGTTCGAGCTAAATCAGGCGGAACCATTTACCATGAAATCGCTTCTTCGCAAACCGGAAAAAGTGATGAAATTTCTTGGTGGACTGGAAATACAGCCGTTAATAAACAAATGGGTCTTCGTAATGATGGGTCTTTAGTATTACGACGCTCGCTCGCAATTGGTACAATTACAACAGATGAAAACATTAATAACTACGGCTCCGCTGGAGCAATGGGCGAATGTTATATAGTTATCGGTGATGCATCAACAGGTTTATCATACAAAAAAACTGGAGTATATGATTTAGTTGCTAGTGGTCTTTCTTTAGCATCTATTACTCCTGATAGTTTCCGTAGTACCCGTAAAGCGATTTTTGGGCGCTCAGAAGACCAAGGTACAACATGGATTATGCCTGGAACGAACGCTGCATTTTTATCGGTTCAAACACAGGCTGATGAAAACACTGCTGGAGACGGTCAAACCCATATTGGATATAATTCTGGCGGAAAAATGAACCACTATTTCCGTGGTAAAGGCAAAACTAATATTAATACTCAGGAAGGTATGGAAGTTAATCCGGGTATTTTGAAATTGGTAACTGGCTCTAATAATGTAATGTTTTATGCTGATGGCGGTATTACATCTGTTAAGCAGCTTTCAATATATAATGGCATATATTTAGCAGCTAATAATTCTACTGCTGGGCTAACATTCGCTCCAACTACTACAATTGATGGCACTAAGCAAATTTTGTGGGAAGGCGGTACTCGTGCTGGTCAGAATAAAAGCTATGTAACTGTTAAAGCATGGGGTAATTCATTTAACGCATCCGGCGATCGTAATCGTGAAACTGTATTTGAAGTTAGTGACGGGCAAGGATATTATTTTTATTCACAGCGTGTGGCTCCAAGTGGCTCTGAAACTACTGGGCCTGTTGTAACCCAGTTCAATGGACAAGTTAATGCTAGAGGAAGTATTATTACTGACGGAAGTCTTAGAGTTAACGGATTAAGTACATTATCCGGACAAGTTACTATGGATAACGGGCTTGTTTTATCCGGCGGTGGTTCTATTACCGGTCAAGTTAAAATCGGTAATACCGCAGATGCTTTCCGTATTTACAATGCTGAATATGGAGCTATTTTCCGTCGTTCTGAAGCGTCTTTGCATATTATACCTACACTTAAAGATGCAGGTGAAAGTGGTGGTATTTCTAACCTTCGCCCATTGAGTGTTTCTCTTAACAACGGTATGGTTCAAATGCGCCATTCTGTTACGTTAGGTGATGATGGTGCTGGCGGTAATATGGTGACCGTTGATAATGATAATAAACTTGTTGTTATAACTAGTCATAGTCGCATTTCTCCTAATTACCGTATGCAATTAGGACAATCGGCATATATCGACGCTGAATGTACTGATACTGCACGACCTGCTGGAGCCGGTTCTTTTGCTTCACAAAATAATGAAAACGTTCGTGCTCCGTTCTATATGAATATTGATAGAACAGATACAAGCACTTATGTTCCTATTGTGAAACAAAGATACGTTCAAAATAATAGTTGTTATTCTATTGGTACTTTAATTAATGGTGGTAACTTTAGAGTTCATTATCACGAAGGTGGTGACGGCGTTTCTACTGGTGCTATTATAAAGGATCTTGGATGGGAATTTAATAAAAACGGTGATTTTTATTCTCCTGGTAAATTAGGCGCTGGTAATGTTCGTATTGGTACTGATGGTAATATCACCGGTGGTTCTGGCAACTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCTATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTATGCCATAATGGAAGGTCAAACATTTGATGCTGGCTTGTATCCTAAGTTAGCTGCGGTGTATCCTTCCGGCGCTCTGCCTGATATGCGCGGTCAAACTATCAAGGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGATGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAAAACACATCAAGTTTTGATTATGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGTAACCATAACCATACAGTGAGTGGTAATACTAGTTCCGCAGGAGCTCACCAACACGCGCGTTCAGGTCCTCAGGTCACTGCTGCATGGGCAGACGATTTGTTTAGAGACGGGGTTACTACGATAGGTGCAAACTCATATGCTAAAATTAACTCAGGTATCACTGGTTCGACTTTAGCAACTAAGGTCGGTAAAACATCAAATGACGGTGCCCACACCCATAGTTGGTCAGGAACTACTAGCTCTACGGGTAACCATGCTCATACGGTAGGTATTGGTGCTCATACCCATTCGGTAGGTATTGGTGCTCATTCTCATACTGTTGCAATTGGTTCCCATGGACATACAATAACTGTAAATGCCACAGGAAATACAGAAAACACAGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9cdaf0c7f87c8acb7cd849c9982e8f5aa9ed32afe0037810e3828dc69f1b0ee0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2797
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank