Protein

View in Explore
Genbank accession
AIF54393.1 [GenBank]
Protein name
glycerophosphoryl diesterphosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDDMNQTKSFVTSSLVDAKEDINRTVNARIAGARFIPKVFANANDLKRAYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTATHVIDFRCITDSAQITLPSGDAYRIPYMAKVEVNWEFTTGVIIFDINTLSLISQSPYVPINANQYVLASYRRYPAEGDRLTWNGVLAQILLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGILPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDATINSIARNSNGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLDYISSHDENAQLELLAGIITDDLIADGKKRLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLITNLTWYKNTYINGKGDIYNLLDGMKDGEERTFAPASGETWFTAIVNLKKNTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTSVNGTPVNPDSWGDNDLKLSDSYTRYSVTYTTYSDNKPFQIGFRASSATGTVSIKNIRLTAGTDNKWSATNCMMAYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAVPSTIITDGENHTFKITIPSGGMKLFLNSNESLVPTVFKQSASSGI
Physico‐chemical
properties
protein length:878 AA
molecular weight: 97703,79110 Da
isoelectric point:5,07432
aromaticity:0,09226
hydropathy:-0,31241

Domains

Domains [InterPro]
DC_1932
STR
17–543
DC_1932 DC_1520 G3DSA:2.60.120.260 DC_1292
IPR017946
STR
368–621
IPR017946 IPR008979
PTHR46211
Unmapped
371–614
PTHR46211
IPR030395
ENZ
376–621
IPR030395
IPR017946
STR
377–612
IPR017946
cd08556
ENZ
379–612
cd08556
IPR030395
ENZ
381–612
IPR030395
PS50007
ENZ
385–429
PS50007
AIF54393.1
1 878
Architecture
STR
RBD
STR 17-809 | RBD 812-878
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIF54393.1
1 878
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,9390
Central domain 371 680 311 0,8179
C-terminal 681 878 197 0,1800
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-680
C-terminal
681-878

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Ld17
[NCBI] 		1500733 Uroviricota > Caudoviricetes > Cequinquevirus >
Host Lactobacillus delbrueckii
[NCBI] 		1584 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIF54393.1 [NCBI]
Genbank nucleotide accession
KJ564037 [NCBI]
CDS location
range 13424 -> 16060
strand +
CDS
ATGATCGAACCAGAAGTTAAACTTTTGATGTTGAAGGGCGACAAAGGTGATGGCCTTTCAGACGATGACATGCACAAAGTTGAGTCGTTAATTGACTCCAATGTTGACGAGGCAAAAGGAAGTCTCAGCAAAGCATTAAGTGCACAGCTTGAAGTTGCGAGAATTGACGACATGAACCAAACCAAGTCATTTGTCACTTCCAGCTTGGTTGATGCGAAGGAAGACATTAACAGAACAGTAAATGCGAGAATTGCGGGTGCGAGATTTATCCCGAAGGTATTTGCCAACGCTAACGATCTGAAAAGGGCATACCCTAAAGGCCAAGACGGCATTTTCGTTGTAGCAGATACCGGACACATGTGGTTATTCGTCAACGGTGCTTGGAAAGATTGTGGAGTATATCAAACTCCAGTTCAGAAAAATCAGACGTTTACGTTCCAGCCTTCTAAAGACGGCTTCCCGAATTATGATACGGCAACGCACGTGATCGACTTTAGATGTATTACAGACAGTGCACAGATCACGCTTCCAAGCGGTGATGCTTACAGGATTCCTTATATGGCTAAGGTGGAGGTCAACTGGGAATTTACCACGGGTGTCATTATCTTTGACATCAACACCTTATCCCTCATTTCACAGTCTCCGTATGTTCCCATCAACGCAAATCAGTACGTCTTGGCTAGTTATAGAAGATACCCAGCTGAAGGAGACCGACTTACTTGGAACGGTGTTTTAGCGCAAATTCTGCTGATTAATGGGGAGACCTATATGGAGCAGAACGTTCAGTTCGTTCCATCAAAAGACGGCTTACCATACTACGATAGCAAGAGGAAGATCATTAACTTCAATTGCCTTACTGACCAAGCCTACGTCTCTTACCAAAATCGCAATTATACGTTGCCACATAATGCTACTGTCGCTCTTGACTTCTCCCGTGGTGTAACTTCCTTCGACATCTTAATTGACATGAAGACGGGGGAGGTCAGCACCAACGACAAGTATCGTTTGTTAACGCCAAATATGGACAAAGTTTCATTTGCGACCGTTAGACTTTTGAATAATGGCAAAGTTGCGATTGAAGGCATTAAATTGCTAGATGAGGTTAGCCCGAAGAATAGCACTGGAATTCTGCCAATCGCACACCGTGGTCTTAATTCAATTGCTCCGGAGGAAAGCTTGGAGGCCTATTCTTTGGCCGTAAGAAGCGGCTACAAAGATATTGAGTGCGACATTTACTTTACGGAAGATGGCATTCCTGTTTTGCACCATGACGCTACTATTAACAGTATTGCCCGCAATTCAAATGGTACAGAGTTGACGCAACCAGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACGCCTATGACTACGGGATTTATAAGTCTGAGATCTTCAAAGGCCTCAATATTTGCACATTTGAAGACATCATCAAGTTCGCTCGTAGAACCGGGGCAAGAGTTCATGCTGAGCTGAAGCAACATTATACCGATGAACAATGCCAAGTGCTTTTAGACATCGTCTCTAAGTATAGAATGGCGAACAAGGTAGGGTGGCAAGCATTTGATCATTCCAGTTTGGATTATATTTCTAGTCATGACGAAAATGCTCAGTTGGAGTTGCTAGCTGGGATCATTACCGATGATTTAATTGCGGACGGCAAAAAGAGGCTTAATGGCAAGAGAAAAGTTGTTCTTAGTGTAGGGCAAGGCGTCACTCAACGATTAGTTGACCAAGCTCATTCCGAAGGGTTCGATGTTTACGTTTGGACTGTCGATGACATTGATGGGGCTAAGAAGTTGATAAACATGGGCGTAGACGGGATCATGACCAACGGCTACATTGATTTGCCGAATTTGCTGAGTAACGAATATGACTTGCAAGTTTCTAATTCTCCTGCGGTTGATTTAATAACTAATTTAACTTGGTACAAGAACACGTACATTAACGGTAAGGGCGACATTTACAATCTGCTTGATGGTATGAAAGACGGAGAAGAGCGCACATTTGCCCCCGCATCTGGTGAAACTTGGTTTACCGCTATTGTTAATCTTAAAAAGAACACATACACTCTCTCCTTTGACGCAAAATCAACGGTAAACAATGACAACCTTACCACTCTCATGAGACATGTCGAGATGGGGGACAACAATTTTAATTGCGTAACTTCGGTTAATGGAACTCCAGTCAATCCTGACAGTTGGGGGGACAATGACTTAAAATTGTCGGATAGCTACACTCGCTACTCGGTAACATATACTACTTATTCCGACAACAAGCCGTTCCAAATTGGATTTAGAGCAAGCTCCGCAACGGGAACAGTAAGTATCAAAAATATTAGGCTTACGGCAGGAACGGATAATAAGTGGAGCGCAACGAATTGCATGATGGCATATTTAGACGCTAATCAAGGTGAGACGTACTATGCAAGACAATTAGAAGAAGGGGCATGGCTGAATGCACCAATGGTAGTTACAAACGACAATCTTGATGCTGTCCCATCAACAATAATTACTGACGGTGAAAACCATACGTTTAAAATTACAATTCCAAGTGGAGGAATGAAGCTTTTCTTAAACTCCAACGAATCTCTCGTTCCAACGGTATTCAAGCAATCAGCTTCAAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4dfb428de8b95899747c181a1e67cf7640f8c3c088b612681a9d1b5a39ead12a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3002
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular Characterization of Three Lactobacillus delbrueckii subsp. bulgaricus Phages Casey,E., Mahony,J., O'Connell-Motherway,M., Bottacini,F., Cornelissen,A., Neve,H., Heller,K.J., Noben,J.P., Dal Bello,F. and van Sinderen,D. 2014 25002431 GenBank