Protein

View in Explore
Genbank accession
YP_009985126.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSNFLTNTGVVAAGSDTPRTLSDRFADVFNVKDFGAIGDGVADDTAAIQIANDAATEVGTTLFFPKGVYRCTDGIDKTCEWVGSGAAKIGAFPLTDDKVFMIPGIKNKLPGTCLLFTGVGTKSFSTNREDEFSSVRYCVLNKGRKGQGLTPFGKDLAIVCDFNYKNTLDGEVTDPTNDNSADYDVGLLMHNTDLSGPSNVTVGGYFKVAGTMHFGQDPDGCTVYELRTMGNIGLAIVGDGTGTNSAFNMHGGAIFGNDHHSRNVESGVEKWGKHALYIDIPSSVGSGSRNGISFHGTWLATKLDVPVKYDRCGAIQFFGVVFENATQTGSQQAGGIKKQIGTSNTGDIGFFGCRFNSDQIRISGALLDTATESTVIVSGSNAGYGVEFWKGKVGGRFTGSKNQTNIQLTDDPTKTTSGVVLRRDSSGNFNILHNNDIKFTCDGGGIKTHLSSTVATVSGGQTNITRNLHKLSGGTQELNTLNGGVEGMRVVLVRNTSADTITLKNQTGNLRINGDFTLGAFDTIELIYIGGYWNEIGRVDRA
Physico‐chemical
properties
protein length:574 AA
molecular weight: 60968,22760 Da
isoelectric point:5,73292
aromaticity:0,08188
hydropathy:-0,24425

Domains

Domains [InterPro]
DC_2249
ATT
4–202
DC_2249 DC_1786
IPR012334
STR
38–124
IPR012334
IPR011050
STR
58–484
IPR011050
IPR024535
ENZ
61–111
IPR024535
YP_009985126.1
1 574
Architecture
ATT
STR
RBD
ATT 4-202 | STR 203-484 | RBD 485-572 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009985126.1
1 574
Domain Start End Length (AA) Confidence
N-terminal 1 77 77 0,9698
Central domain 78 407 331 0,9305
C-terminal 408 574 166 0,9413
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-77
Central
78-407
C-terminal
408-574

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage alia
[NCBI] 		2696379 Uroviricota > Caudoviricetes > Stephanstirmvirinae > Justusliebigvirus alia >
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009985126.1 [NCBI]
Genbank nucleotide accession
NC_052655.1 [NCBI]
CDS location
range 20983 -> 22707
strand +
CDS
ATGTCAACTACAATTACTAATTTACCGGAAACATCAAAAGTTAATGGTTCTGATTACCTAGTTTTAGACCAACCTGATAAGACCGTTAAAAGCACAGTTTCCAACTTTCTTACTAACACTGGGGTGGTTGCTGCGGGGAGTGATACACCTAGAACATTATCCGATAGATTTGCTGATGTATTTAACGTTAAAGACTTTGGTGCAATTGGTGATGGAGTTGCTGATGATACAGCAGCAATACAGATAGCTAATGATGCAGCTACAGAAGTGGGTACTACTTTGTTCTTCCCTAAAGGGGTGTATCGTTGTACTGATGGTATCGACAAGACTTGTGAATGGGTAGGTTCAGGTGCTGCAAAAATAGGTGCTTTTCCTCTTACGGATGATAAAGTATTTATGATACCAGGAATCAAGAACAAACTACCTGGTACTTGCTTGTTATTCACTGGTGTAGGAACAAAATCTTTCTCTACAAATAGAGAAGACGAGTTCTCTAGTGTACGCTATTGTGTGTTAAATAAGGGAAGGAAAGGGCAAGGGTTAACACCTTTCGGTAAAGACCTAGCAATAGTGTGTGATTTTAACTATAAGAATACACTAGACGGAGAAGTTACAGATCCTACTAATGACAACTCTGCGGATTACGATGTAGGGTTGTTAATGCACAATACAGACCTATCTGGCCCATCTAATGTAACAGTCGGGGGGTATTTCAAGGTAGCAGGTACAATGCACTTTGGGCAAGACCCTGACGGGTGTACTGTATATGAATTAAGGACTATGGGAAACATTGGCCTAGCTATAGTAGGGGATGGCACTGGCACTAATAGTGCATTTAATATGCACGGTGGTGCTATCTTTGGAAACGACCATCACAGCCGTAACGTAGAGTCCGGTGTAGAGAAGTGGGGAAAACATGCACTATACATAGACATCCCATCTTCTGTAGGTTCTGGTTCACGTAATGGTATCTCCTTCCATGGAACATGGCTGGCAACTAAGTTAGATGTTCCAGTAAAATATGACAGATGCGGTGCTATCCAATTCTTTGGTGTGGTGTTTGAGAATGCAACACAAACAGGTAGCCAACAAGCTGGAGGTATTAAAAAACAAATTGGAACCAGTAATACAGGTGATATAGGTTTCTTTGGGTGCAGATTTAATTCAGACCAGATACGTATTTCTGGTGCTTTATTGGATACTGCGACGGAATCGACAGTGATCGTTTCTGGAAGTAATGCTGGATATGGTGTTGAATTTTGGAAAGGAAAGGTTGGAGGGCGTTTTACAGGAAGCAAAAATCAAACAAATATTCAACTAACGGATGATCCAACAAAAACAACTAGTGGTGTGGTTCTACGTCGTGATTCTTCTGGTAATTTTAATATCTTACATAACAATGATATTAAATTTACATGCGACGGTGGGGGGATTAAGACCCACCTATCATCAACTGTAGCTACAGTTAGTGGTGGTCAGACTAATATAACTAGAAACTTGCACAAGCTAAGTGGTGGTACTCAAGAGTTAAACACATTGAACGGTGGAGTCGAAGGGATGCGTGTTGTTTTAGTGAGAAACACATCTGCCGACACAATTACACTAAAGAATCAAACAGGTAATTTACGCATCAATGGGGACTTTACTCTAGGAGCCTTCGACACTATAGAGCTAATTTACATAGGTGGTTATTGGAATGAAATAGGACGAGTTGACAGGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9eeb925937f3e38dd5dccc36bd4ac461168612fc03c84a55231b720c65e4e359
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7089
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment Olsen,N.S., Forero-Junco,L., Kot,W. and Hansen,L.H. 2020 — GenBank