Protein

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Genbank accession
CBV65236.1 [GenBank]
Protein name
predicted tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,60
Protein sequence
MALISQSIKNLKGGISQQPDILRYPDQGSQQVNGWSSESEGLQKRPPMVFLKTLGGSDTLGPAPYIHLINRDESEQYYAVFTGTGIRVFDLAGNERQVRYTTDGSTYINTNNPRNDLRMVTVADYTFIVNRNVRVTRDTNSVNLAGFNPKQDALINVRGGQYGRTLQIIINGNTQATYQIPDGSQPEHVNNTDAQWLAEELARQCRVSAPGWTFNVGQGYIHIIAPEGQQIDSLTTKDGYADQLINPVTHYAQSFSKLPTNAPEGYVVKIVGDASKSADQYYVRYDTTRKVWSETLGWNVNDQLLFETMPHALVRAADGNFELKRIEWSPKTCGDDDTNPWPSFMDSTINDVFFFRNRLGLLSGENIILSRTAKYFNFYPASIATLSDDDPIDVAVSTNRIAILKYAVPFSEELLIWSDEAQFVLTASGTLTSRSIELNLTTQFDVQDRARPFGIGRNVYFASPRSSFTSIHRYYAVQDVSSVKNAEDITAHVQNYIPNGVFDICGSSTENFCAVLSQGDQSKIFMYKFLYLNEELRQQSWSHWDFGSNVQVLACQCINSDMYVILRNEFNTFLTRVSFTKSTVDLQGEPYRAFMDMKIRYMIPNGTYNDDTFTTTLHLPTIYGADFAKGKITVLEADGKITEFEEPEVGWKNDPELRLNGNLEGSVVYVGFNIDFVYEFSKFRIKQVDNDGSTSTEDIGRLQLRRAWVNYEDSGTFDIYVENQSSNWKYTMAGARLGAHVMRTGKLNLGTGQYRFPVVGNAKFNTVFILSDATTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:795 AA
molecular weight: 89536,01370 Da
isoelectric point:5,22904
aromaticity:0,11572
hydropathy:-0,37711

Domains

Domains [InterPro]
IPR058003
TTP
1–795
IPR058003
CBV65236.1
1 795
Architecture
TTP
TTP 1-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CBV65236.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9928
Central domain 144 349 207 0,1519
C-terminal 350 795 445 0,2078
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-349
C-terminal
350-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Vi06
[NCBI] 		866889 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teseptimavirus
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CBV65236.1 [NCBI]
Genbank nucleotide accession
FR667955 [NCBI]
CDS location
range 21693 -> 24080
strand +
CDS
ATGGCACTCATTAGTCAATCAATCAAGAACTTGAAGGGTGGTATCAGTCAGCAGCCAGACATCCTTCGGTATCCAGACCAAGGGTCACAACAAGTTAACGGTTGGTCTTCGGAGTCCGAGGGTCTCCAAAAGCGGCCACCTATGGTTTTCCTTAAGACCCTGGGAGGGAGTGACACCCTAGGACCAGCACCATACATCCATCTGATTAACCGAGATGAAAGCGAGCAGTATTACGCTGTGTTCACCGGAACAGGTATCCGTGTGTTTGACCTTGCTGGGAACGAAAGGCAGGTACGTTATACCACTGATGGTTCTACATACATCAATACGAACAACCCACGGAATGACCTAAGGATGGTCACTGTGGCAGACTATACGTTCATCGTTAACAGGAACGTGCGTGTCACACGAGATACCAACTCAGTGAACCTCGCAGGGTTTAACCCGAAGCAGGACGCTTTGATAAACGTTCGTGGTGGTCAATACGGCCGCACCTTGCAGATCATTATTAACGGTAACACACAAGCAACCTATCAGATTCCTGATGGCTCGCAGCCAGAACATGTGAACAATACGGACGCTCAGTGGCTAGCGGAAGAGTTGGCACGCCAGTGTCGAGTGAGTGCACCAGGATGGACTTTCAATGTAGGTCAAGGGTACATTCATATTATAGCCCCTGAAGGTCAACAGATTGATTCCTTGACGACTAAGGATGGATATGCTGACCAGCTGATTAACCCTGTCACCCACTATGCTCAGTCATTTTCTAAGTTGCCCACTAACGCCCCAGAGGGGTACGTGGTGAAGATCGTAGGGGACGCCTCTAAGTCTGCCGACCAGTACTACGTTCGGTATGACACTACGCGTAAAGTGTGGTCGGAGACACTGGGGTGGAACGTTAATGACCAACTTCTGTTCGAAACAATGCCACATGCACTCGTTCGTGCTGCTGACGGCAACTTTGAGCTCAAGCGGATTGAGTGGAGCCCTAAGACTTGTGGTGATGACGATACTAACCCGTGGCCTTCCTTCATGGATTCCACAATCAACGATGTGTTCTTCTTCCGTAACCGTTTAGGTTTACTTAGTGGGGAGAACATTATTCTGAGTAGAACCGCCAAGTACTTCAACTTCTACCCAGCGTCCATCGCAACCTTGAGTGACGATGACCCTATAGATGTGGCTGTGAGTACCAACCGGATAGCAATCCTAAAGTATGCCGTTCCATTCTCAGAAGAGCTGCTCATCTGGTCAGACGAAGCACAATTCGTCCTGACAGCGTCCGGCACTCTAACGTCACGCTCCATTGAGCTGAACCTGACGACTCAGTTTGATGTACAGGACCGAGCGAGACCGTTTGGCATTGGTCGCAACGTTTACTTTGCTAGCCCAAGGTCGAGCTTTACGTCTATCCATCGATACTACGCTGTGCAGGATGTAAGTTCCGTCAAGAATGCTGAGGACATTACAGCACACGTTCAGAACTATATCCCTAATGGGGTGTTCGATATTTGCGGTAGCAGTACTGAAAACTTTTGTGCAGTTCTCTCTCAGGGGGACCAGAGTAAAATCTTTATGTACAAATTCCTATACCTGAACGAAGAGTTGAGACAACAGTCCTGGTCTCATTGGGACTTTGGGTCAAACGTGCAGGTGTTAGCCTGTCAATGCATCAACTCGGATATGTATGTGATTCTCCGCAATGAGTTCAATACATTCCTCACGAGAGTGTCGTTCACGAAGAGTACCGTGGACTTACAAGGTGAACCATACCGTGCCTTTATGGACATGAAGATTCGCTACATGATTCCTAACGGAACGTATAATGATGATACCTTCACAACCACCCTTCACCTACCAACTATCTACGGTGCAGACTTTGCAAAGGGTAAGATTACCGTTCTGGAGGCTGATGGGAAGATTACCGAGTTTGAGGAACCCGAGGTCGGCTGGAAGAATGACCCTGAGCTTAGACTTAATGGTAACTTAGAGGGTAGCGTAGTGTACGTTGGGTTCAACATTGACTTCGTCTATGAGTTCTCTAAGTTCCGCATCAAACAAGTTGATAACGACGGGTCTACATCTACGGAGGACATAGGTCGCTTGCAATTACGGAGGGCGTGGGTGAACTATGAGGATTCTGGAACGTTCGACATTTATGTTGAGAACCAATCGTCCAACTGGAAGTATACAATGGCAGGTGCGCGCTTGGGCGCTCACGTCATGAGGACTGGGAAGCTGAACTTGGGGACCGGACAGTATCGATTCCCTGTGGTCGGTAACGCTAAGTTCAATACGGTGTTCATCTTGTCCGATGCGACTACCCCTCTGAACATCATTGGGTGTGGCTGGGAAGGGAACTACTTACGGAGAAGTTCTGGTATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
94d1fcf07781647236b3f5f944a6aa9e90486ed2f54a21b382c1d71d690a6808
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9059
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi Pickard,D., Toribio,A.L., Petty,N.K., van Tonder,A., Yu,L., Goulding,D., Barrell,B., Rance,R., Harris,D., Wetter,M., Wain,J., Choudhary,J., Thomson,N. and Dougan,G. 2010 20817773 GenBank