Protein
View in Explore- Genbank accession
- YP_717772.1 [GenBank]
- Protein name
- structural protein
- RBP type
-
TSP
- Protein sequence
-
MAQNTNLNVTPYYDDFDKAKNFYRVLYRPGFPIQARELTTMQSILQNQVESVGAHLFKDGAMVIPGQVGYDLNVDAIMLQESFLGANVEDYRTQLDNKIITGLTSGVKAKVLYSIPASMSEKGYITIYVKYIESGGEQNSQNTFTNNEQLVTDTEITFGTTLIEVGSPFAQLLPTDALQTGSVAYVQEGVYFIRGFFVDVPYQYILLDQYGTNPKYRVGLEILESIITPEDDLSLNDNAAGTSNYAAPGAHRFKVSTNLTKKLLTDDADKDFIELLRINGNKIEKLVDRSAYDEIEKTMALRTYEESGNYVVNDFQITMRENLNDGFNNGVYQSGETTAQGNTASSSMYAVEFSPGVAYVRGYRIKNLSPVYLDLDKPRSTNAAQNVIIPFEMGNYSNINNIYGFPNCSGATISNHYQVVELYDTAIATPGDVSGNLIGYARVKSCEFSSNPNGTFGDADDIYKLNLSDVQMITVLQLNSNVTVSQGSVLEGVNSGARAYVIDALSGTNDIPVYQVEGVFQAGEMLTVDGIQLDTITHFHSYVYSDTRSFAARDEITQAVEFTADLILENINLVQGASFTYDATGGSETITGLNSNFAADLRPGDRIYFSDTAFVTVDLVDPTDLAASRVGTIFNYQTQVVNVTPGAVAPVAGTYTALLRYRGKLFGLENADLLSRMPRPYVKSISDESMVVRRTFDAQTVASNSISITLPENEQFSALSPEHFSFTVMASTNGSYPVGSQIPIDDTNTGAFGYTSFTSAERTTLQIDNLTNITSVKVTGTISKNFTTRKTKSPSRMFILKVNKTQSNLDKQNYGLTHSLLYGTRIEDKEISLGLVDAYHIHAVYESLDDSDPVIPSVTLVEPSFFATGSIVIGKTSGARARVVDFNSSTLKLTVVYLSGQLVAGEVVNGFDSSNNAISGIINDSDGSVIVGSKVVTDRYQLADGQTGFLYTTSSLVRQKGVATPIRKLKVVLDYYNHSATGDYFGGQSYLDTDYEDVPFFGDSFLADFLDFRPGCKNLYSGSGTVASPAFVNCSTFDFKSRVFPTSSTPAATLIDIPKLDSDFRCDFDWYLPRIDKLFLLPNGEFQVIKGKSEENPSPPDNIAEGMQLALLRHRPYGFSPEDDVIIIKSDNRRYTMRDIGSIEKRLDQVEYYTAINMLEADTINFQITDAQGKNRFKNGFLVDDFTDHAKSAVGLQDYSVSLDYIEGTCRPSHYTTNVPMVINESLSTNYRKTGPIITLPYQEELLVDQPYASRVENVNPFNVFAYIGRIDLTPQSDDWVDTNRLPTRVTNMEGDFRATQEELNVDQNGFAPIQWNAWQTNWSSTSGPVAGSTWREHTFANFRPGRGRRVMQNTTTTTTTSLSRTGIRTRVVPRIDRQSLGDSLLSSTTIPWIRSRNVDVNIVRMKPRTSFFAFFDGQKIDDYLVPKVIELIKDPTTDSRTNSTPFVIGETVVGLTSGCRFRVAAPNDYFKWNPYDDTELPTSYSSTTAFLNIDTLSLAEQAAGDFYGNMQVGEILQGASGATAVVQNRRIVTDRLGQYRGSFAIPDPGLETNPRWNTGTRVIRFTTNENDSRLPGAVASAAQAEYAATGTLNTVQENVLAIRNAEIVRDTVSQDRTVSSTRTESRQVGWWDPLAQSFLVDEEGGVFITSVSVYFNAKDDNIPISMQIRTMENGYPTTTILPFSDVTINPADVQISETGSVATTFVFQAPVYIPQSIEHCFVLFSDSNSYQVWISRMGELDITGDRTISEQPYAGVLFKSQNATTWTADQYEDMKFQINRAVFDNTSTSVLTLNNAPLDRGNKGKINLGNDAIQTFQPQLQLVLNSTIPYTIGARIKQEITLAQATIVGVEDTVSGTVLTVNDISGNWSAGSNTGGVILNRVVSSKTLATMTVNTPSGDFSVGEIITGNSATTPTAEVITWDSGTNTLTLRYISTEFTPSTETITGGDSNVTATVNTITYSGDATSGGTAVDDAFVNTTPTYTATNRKVRVNHYNHAMNDIDNNVEITGVESEVSPTYLTSSLSDTDTTIQVNDASAFHTIINGSNVSASNLGYIMIENEIMSYSSITNNGRTITINERGIDGTTAVSHADETPVMCYNLDGIPLIEINKTHEAISSPTLDTYDIATSSLGRLGIKSGGPNIVATQNIQYEIITPQIQRLLLPKTNITGRINTITGTSINDGTNLSQNSFSNTGEFFDILLNDSNYFNAPQLICSQINESSELSGAKSIRMDLSLFSDSTSVSPVIDTDRMSITLTSNRINNPSNPNTALLPRGDGHDAAYITKVATLTNPSSSIKLIFAGYRPPNTFIKPLYRVVPTGATETIDQIGYEFFPTNDATIPATTENELYQDYEYEITGLDFTAFQIKLVFVSPNQAFVPIIKDFRAIALAV
- Physico‐chemical
properties -
protein length: 2391 AA molecular weight: 262397,09320 Da isoelectric point: 4,66395 aromaticity: 0,09368 hydropathy: -0,23450
Domains
Domains [InterPro]
IPR032096
STR
12–67
STR
12–67
IPR032096
STR
181–342
STR
181–342
DC_0082
RBD
1284–2391
RBD
1284–2391
1
2391
Architecture
STR 12-67 | STR 80-1295 | RBD 1296-2391
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
2391
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 1461 | 1461 | 0,9133 |
| Central domain | 1462 | 1660 | 200 | 0,2729 |
| C-terminal | 1661 | 2391 | 730 | 0,0560 |
Note: Constraints were applied during segmentation.
Fixed 10 C-terminal predictions appearing before Central domain
Fixed 10 C-terminal predictions appearing before Central domain
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-1461
1-1461
Central
1462-1660
1462-1660
C-terminal
1661-2391
1661-2391
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Synechococcus phage syn9 [NCBI] |
382359 | Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes |
| Host |
Synechococcus [NCBI] |
1129 | cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae |
| Host |
Synechococcus sp. WH 8012 [NCBI] |
166313 | Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus > |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
YP_717772.1
[NCBI]
Genbank nucleotide accession
NC_008296
[NCBI]
CDS location
range 85976 -> 93151
strand +
strand +
CDS
ATGGCACAGAACACCAACCTAAACGTCACACCTTACTACGACGATTTCGATAAGGCGAAAAACTTTTATCGAGTGTTGTATCGTCCTGGATTCCCTATTCAGGCAAGAGAGCTCACAACAATGCAGAGTATTCTGCAAAATCAGGTAGAGAGTGTTGGAGCTCACTTGTTTAAAGATGGTGCCATGGTCATTCCTGGTCAAGTAGGATATGACTTGAATGTTGATGCGATTATGCTTCAGGAAAGTTTCCTGGGTGCAAACGTTGAAGACTATCGCACCCAGTTAGATAACAAAATTATCACTGGTCTTACATCTGGCGTTAAAGCAAAGGTGCTGTATAGCATCCCCGCCTCGATGTCGGAAAAAGGGTATATTACGATTTACGTTAAGTATATTGAATCTGGTGGTGAGCAAAACAGTCAGAATACATTTACCAACAACGAGCAGTTAGTAACAGACACAGAAATTACTTTCGGCACTACTCTTATTGAAGTTGGATCTCCGTTTGCTCAGTTGCTTCCTACTGATGCACTTCAAACTGGATCTGTTGCATATGTCCAAGAGGGTGTATACTTCATCAGAGGTTTCTTTGTTGACGTACCTTATCAGTATATTCTCCTTGATCAGTATGGAACTAACCCCAAATACAGAGTCGGTCTCGAAATCCTTGAATCGATCATCACCCCAGAAGATGACTTATCACTTAATGATAACGCTGCAGGCACATCTAACTATGCTGCTCCTGGTGCTCACAGATTCAAAGTAAGTACAAACTTAACTAAGAAGTTACTTACAGATGATGCCGATAAAGACTTTATCGAATTGTTGAGAATCAATGGTAATAAAATTGAGAAACTGGTCGATCGTAGTGCATACGATGAAATCGAAAAGACCATGGCTCTCAGAACTTATGAAGAGTCTGGAAACTATGTTGTAAATGATTTCCAGATCACAATGAGAGAAAATCTCAATGATGGATTCAACAACGGCGTATATCAATCTGGAGAAACTACAGCGCAAGGGAATACTGCATCTTCTTCAATGTATGCAGTTGAATTTAGTCCTGGTGTTGCATATGTAAGAGGTTACAGAATCAAAAACCTCAGTCCTGTTTATCTTGATCTTGATAAACCCAGATCTACAAATGCTGCACAAAACGTTATTATCCCGTTTGAGATGGGTAACTACTCAAACATCAATAACATTTATGGTTTCCCCAACTGCTCTGGTGCAACAATTTCCAATCACTATCAGGTTGTAGAACTATATGATACTGCTATCGCTACTCCTGGAGACGTTAGTGGCAATTTGATTGGATACGCTCGTGTTAAATCATGCGAGTTTAGTAGCAATCCTAATGGCACGTTTGGTGATGCAGATGACATCTACAAGTTAAATCTTTCCGATGTCCAAATGATTACAGTTCTTCAACTTAACAGTAATGTTACTGTTTCGCAAGGATCTGTATTAGAAGGTGTAAATTCTGGAGCAAGAGCATATGTTATCGATGCTCTTAGCGGCACTAATGATATTCCCGTTTATCAAGTAGAGGGTGTTTTCCAGGCAGGTGAAATGCTCACAGTTGATGGTATTCAATTGGATACCATTACACATTTCCACAGTTATGTGTATTCTGACACCAGATCTTTTGCTGCTCGTGATGAAATTACACAAGCAGTAGAATTTACTGCAGATTTAATTCTTGAGAATATTAATTTAGTCCAAGGCGCATCTTTTACTTATGATGCAACTGGAGGATCTGAAACTATTACTGGTCTGAATAGTAACTTTGCTGCAGATTTGAGACCTGGAGACCGAATTTATTTCTCCGATACTGCATTTGTAACTGTAGATTTGGTTGATCCTACAGATCTTGCTGCTTCTAGAGTCGGTACAATTTTTAATTATCAGACTCAAGTTGTAAATGTAACTCCTGGTGCAGTTGCTCCTGTTGCTGGCACATATACAGCACTTCTTAGATATAGAGGAAAATTATTTGGGTTAGAAAATGCTGACCTTCTGAGCAGAATGCCTAGACCTTATGTCAAGAGCATTTCTGATGAATCGATGGTCGTTAGAAGGACATTTGATGCTCAGACTGTTGCTTCCAACTCCATCTCTATTACTCTTCCTGAAAACGAGCAATTCTCTGCACTCTCACCAGAGCATTTCAGTTTCACTGTAATGGCTAGCACCAATGGGTCTTATCCTGTTGGATCTCAGATTCCCATTGATGATACTAACACTGGTGCATTTGGATATACTTCATTTACTTCTGCAGAAAGGACTACACTTCAGATTGACAACTTAACCAATATTACTTCGGTTAAGGTTACTGGCACAATTTCCAAAAACTTCACCACAAGAAAAACCAAGTCTCCTTCTAGAATGTTTATTCTGAAGGTTAACAAAACTCAGAGTAACCTTGACAAGCAAAATTATGGTCTGACCCATTCTCTGCTCTACGGCACCAGAATTGAAGATAAGGAGATTTCTTTGGGTCTGGTTGATGCATATCACATCCATGCAGTTTATGAATCACTGGATGATTCAGATCCCGTAATTCCTTCTGTCACCTTAGTTGAGCCGTCTTTCTTTGCAACAGGATCTATTGTTATTGGTAAAACATCTGGTGCTCGTGCTCGCGTTGTAGACTTTAACTCCAGCACCCTTAAGTTGACCGTTGTATATCTTTCTGGTCAATTAGTTGCTGGTGAAGTTGTAAATGGTTTTGATAGCAGCAACAATGCAATTAGTGGAATTATCAATGACTCCGATGGATCTGTAATTGTTGGATCTAAAGTTGTTACTGATAGATATCAACTTGCAGATGGACAAACAGGTTTCTTATATACAACTTCATCTCTTGTTAGGCAGAAAGGTGTTGCAACACCTATTCGTAAGTTAAAAGTTGTCCTTGATTACTATAATCATTCTGCAACTGGTGACTATTTCGGTGGTCAGTCTTATCTGGATACTGATTATGAGGATGTCCCCTTCTTCGGTGATTCTTTCCTTGCAGATTTCTTAGATTTCCGTCCTGGTTGTAAGAATCTTTATAGTGGATCTGGCACGGTTGCCTCTCCTGCATTCGTTAATTGCTCGACATTTGATTTCAAATCAAGAGTATTCCCAACTTCTTCCACACCTGCAGCGACTCTGATCGACATTCCTAAGTTGGATAGTGATTTCAGATGCGACTTTGACTGGTATTTGCCTAGAATTGATAAGTTATTCTTACTTCCCAATGGCGAATTCCAAGTAATTAAAGGTAAGTCTGAAGAGAATCCTTCCCCTCCAGATAATATTGCTGAGGGTATGCAACTTGCTCTCTTAAGACATAGACCCTATGGATTTAGTCCAGAAGATGATGTAATCATTATTAAGTCTGACAACAGACGATATACAATGAGAGACATCGGATCAATTGAAAAGCGTCTCGATCAAGTTGAATATTACACTGCTATCAACATGCTTGAGGCAGATACAATCAACTTCCAAATTACCGATGCTCAAGGTAAAAATAGATTCAAGAATGGATTCTTGGTTGATGATTTTACCGATCATGCAAAATCTGCTGTTGGTTTACAGGACTATTCTGTATCTCTTGACTACATTGAAGGCACTTGCCGTCCATCTCACTATACAACCAATGTCCCGATGGTGATTAATGAATCACTGTCCACTAATTATAGAAAAACTGGTCCTATTATTACTCTTCCATATCAGGAGGAATTGCTGGTTGATCAACCCTATGCTTCTCGTGTAGAGAATGTTAACCCATTTAACGTTTTTGCTTACATTGGTCGTATTGATCTGACTCCTCAGTCAGACGACTGGGTAGATACTAATCGTCTTCCTACCAGAGTCACCAATATGGAAGGTGATTTTAGAGCGACCCAGGAAGAATTAAACGTTGATCAGAATGGTTTTGCACCTATTCAGTGGAATGCATGGCAAACTAACTGGTCTTCTACCTCTGGTCCTGTTGCTGGTTCTACTTGGAGAGAGCATACATTTGCTAACTTCCGGCCTGGTCGTGGTCGTAGAGTTATGCAAAACACCACAACTACTACTACCACCTCTCTGTCTAGGACTGGTATTCGGACAAGAGTTGTCCCCAGAATTGATCGTCAATCTCTTGGAGATAGTCTCTTATCCTCTACAACTATTCCTTGGATTAGATCTAGAAACGTTGATGTCAATATCGTCCGTATGAAGCCTCGGACATCATTCTTTGCATTCTTCGATGGTCAAAAGATTGATGATTATCTGGTGCCAAAAGTTATTGAATTGATCAAGGATCCCACTACAGATAGTCGGACAAACTCAACTCCTTTTGTTATTGGTGAAACTGTTGTTGGTTTAACTTCTGGTTGCAGATTCAGAGTTGCTGCACCAAATGATTACTTTAAGTGGAATCCCTATGACGATACTGAGCTTCCAACATCATATTCTTCTACTACTGCATTCCTGAATATTGATACACTTTCTCTTGCAGAGCAAGCAGCAGGTGATTTCTATGGAAACATGCAGGTTGGAGAAATCCTTCAGGGTGCTTCTGGTGCAACTGCTGTTGTCCAAAATAGAAGAATTGTCACAGACAGACTTGGACAATATAGAGGATCCTTTGCTATTCCCGATCCTGGTCTGGAAACTAATCCTCGCTGGAATACTGGCACTAGAGTCATTAGATTTACAACTAACGAAAACGATTCTCGTCTTCCTGGTGCTGTTGCATCTGCTGCACAAGCAGAATATGCGGCAACTGGCACACTGAATACTGTCCAAGAAAACGTCCTTGCCATCAGAAATGCAGAAATTGTTAGAGATACTGTAAGTCAGGATCGGACGGTCAGTTCGACTCGGACAGAATCTAGACAGGTTGGTTGGTGGGATCCCCTTGCTCAATCTTTCCTGGTTGATGAAGAGGGTGGTGTATTCATTACATCCGTCTCTGTTTATTTCAACGCTAAGGATGATAACATTCCGATCTCTATGCAGATCAGGACAATGGAAAATGGTTATCCCACAACTACCATTCTTCCTTTCTCTGATGTTACTATCAACCCTGCTGATGTGCAGATTTCCGAAACTGGTTCAGTGGCAACTACGTTTGTATTCCAAGCACCTGTTTATATCCCACAGTCTATTGAGCACTGTTTCGTCCTCTTCTCCGACTCCAATTCCTATCAGGTTTGGATCTCTAGAATGGGTGAATTGGATATTACTGGTGACCGCACAATCTCCGAGCAACCTTATGCAGGTGTCTTGTTTAAGTCGCAAAACGCAACTACTTGGACAGCAGACCAGTATGAGGATATGAAATTCCAGATTAACAGAGCAGTATTTGACAATACTTCAACCTCTGTGCTCACCTTGAATAATGCACCTCTTGATAGAGGTAATAAAGGTAAGATTAATCTTGGAAATGATGCAATTCAAACTTTCCAACCACAATTGCAACTTGTGCTGAATTCTACTATTCCTTACACTATTGGTGCAAGAATTAAGCAAGAAATTACTCTTGCTCAGGCAACTATTGTTGGTGTAGAAGACACTGTTAGTGGCACAGTCTTGACTGTAAATGACATTTCTGGTAACTGGTCTGCTGGATCTAATACTGGTGGTGTTATTTTGAATAGAGTGGTTTCTTCCAAGACTCTGGCAACCATGACAGTCAACACACCTTCTGGTGACTTTTCTGTTGGAGAAATTATTACAGGTAACTCTGCCACCACACCAACTGCAGAAGTAATTACTTGGGATAGTGGCACAAACACACTAACACTTCGATATATTTCTACAGAATTCACTCCTTCTACAGAAACTATTACTGGTGGAGATAGTAATGTAACTGCAACTGTAAACACCATTACATACTCTGGTGATGCTACAAGCGGTGGCACTGCTGTTGATGATGCTTTTGTTAATACGACTCCCACATATACTGCAACAAACAGAAAGGTCCGTGTTAATCATTACAATCATGCAATGAATGACATTGATAATAATGTTGAGATTACTGGTGTTGAATCTGAAGTTTCTCCTACATATCTGACATCTTCACTTTCGGATACTGATACTACTATTCAGGTGAATGATGCATCTGCATTCCACACCATTATCAATGGATCTAACGTCAGTGCAAGTAATCTTGGATATATCATGATCGAAAATGAAATTATGTCCTATAGCTCTATCACTAATAATGGTAGAACTATTACTATCAATGAAAGAGGTATTGATGGGACAACTGCAGTTTCTCATGCTGATGAAACGCCAGTTATGTGCTATAACTTAGATGGCATTCCTCTGATTGAGATTAACAAAACTCATGAAGCAATTTCTAGTCCTACCTTAGATACTTATGATATTGCAACATCATCTCTTGGTAGACTGGGTATTAAATCTGGCGGTCCTAATATTGTTGCAACTCAGAATATTCAGTATGAAATTATCACTCCCCAGATTCAAAGATTGTTACTTCCCAAAACAAATATTACAGGTAGAATCAACACAATCACTGGCACATCGATTAACGATGGCACTAACTTGAGTCAGAATTCCTTCAGTAATACTGGAGAATTCTTCGACATTCTTCTTAATGATAGTAACTACTTTAATGCTCCTCAATTGATCTGCTCCCAGATTAATGAGTCGTCTGAATTGTCTGGTGCAAAATCTATTAGAATGGATTTGAGTCTATTCAGTGATTCCACAAGTGTCAGTCCTGTTATTGATACTGATAGAATGTCTATTACACTGACTTCCAATAGAATCAATAATCCTTCTAATCCTAATACTGCATTGCTTCCTAGAGGTGATGGTCATGATGCAGCATATATCACAAAAGTTGCAACACTGACGAATCCTTCCTCTTCTATTAAATTGATCTTTGCGGGTTACCGTCCTCCCAACACCTTTATCAAACCACTATATAGAGTAGTGCCTACAGGAGCGACTGAAACTATTGACCAAATTGGTTACGAATTCTTCCCAACCAATGATGCAACAATTCCTGCCACCACAGAGAATGAATTGTATCAAGATTATGAATATGAAATCACAGGATTAGATTTCACTGCATTCCAGATTAAGTTGGTGTTTGTTTCTCCTAATCAGGCATTTGTCCCCATTATTAAAGACTTCAGAGCGATTGCCCTTGCAGTATGA
Genome Context
Genome Context
Tertiary structure
PDB ID
ea8dd830e6d3e156ccf80582b2feb1a35eeea0aeb636a8739edf55e64d1cc425
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Bacteriophage Syn9 | Hendrix,R.W., Pedulla,M.L., Peebles,C.L., Pope,W., Houtz,J.M., Smith,A.L., Hatfull,G.F. and King,J.A. | 2003-10 | — | GenBank |