Protein

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Genbank accession
XPN40790.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAVGISVGDGGIACPNTDCAPDVTVTETFGNKSADISALGTDYYNGIYLMKAAPSSNIADHAVSFTALKDGTIKILTVGVGGSDTGDVTVAIYSAASVSGPWTKVDEIKQSVTTTGANEHVDFVKDIPVSSGSIYFIAVGSPDVELIEHSASGGSGKWTYATPFPDTLDDADSSTSGFAIEVFATVETAQ
Physico‐chemical
properties
protein length:190 AA
molecular weight: 19400,14600 Da
isoelectric point:4,10215
aromaticity:0,07895
hydropathy:0,11211

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA7
[NCBI] 		3389923 Viruses > unclassified bacterial viruses >
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPN40790.1 [NCBI]
Genbank nucleotide accession
PQ582223.1 [NCBI]
CDS location
range 18614 -> 19186
strand -
CDS
ATGGCAGTAGGTATCTCAGTTGGTGATGGTGGTATTGCATGCCCTAACACTGACTGTGCTCCTGATGTTACAGTAACTGAAACATTCGGTAACAAGAGTGCAGATATATCAGCACTTGGCACTGACTACTATAATGGCATCTATCTAATGAAGGCTGCACCATCTAGCAATATAGCTGATCATGCTGTTAGCTTTACAGCCCTTAAAGATGGAACCATTAAGATATTGACAGTAGGCGTTGGTGGTTCAGATACAGGTGATGTAACAGTCGCTATCTACAGTGCAGCAAGTGTATCTGGCCCATGGACTAAAGTTGATGAGATAAAGCAGAGTGTTACCACGACAGGCGCAAATGAGCATGTTGACTTTGTTAAAGATATTCCAGTCTCATCTGGTAGCATTTACTTTATTGCAGTTGGCTCACCTGATGTGGAGTTAATAGAGCATTCAGCATCAGGCGGAAGTGGTAAGTGGACTTATGCTACTCCATTCCCTGATACACTTGATGATGCTGACTCATCAACCTCTGGGTTTGCCATTGAAGTATTTGCCACTGTCGAGACAGCTCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
16fdfec66d357a0bd9bac420e0b9a174bc28c7f301ccff7381fad9302b804a7f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4127
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-infection dynamics on Vibrio spp. biofilm disruption Nolivos-Rodriguez,K., Cueva,D.F., Jara-Medina,N., Endara,D., Feijoo,M., Vargas,D., Aguilera-Pesantes,D., Vizuete,K., Debut,A., Melo,L.D.R. and Machado,A. 2021-06-16 — GenBank