Protein

View in Explore
Genbank accession
USL86287.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,75
Protein sequence
MGAGILIDYNDGRPVMEITAGLRAPSFCTTFNQRCQSDKTLTINTPLTPGSELVVALTNPVEVMEVFDQTLVLPDPFYVTSIQRNGDGGITLRGEDAYNAYSGLPTWGGVIMEVLPVGSRNAGLLVANSTDFTAISNVARLMTCRYAQRVHVNGSMPLPVGGVPFARWDDGNVSVGFDGGSIIVRNASYGGIDDVGAAVDMDLVIFNNTPPSPGTGITMTNNQGQVTFSTVNKPFVYDRTINIGGGDQHIGNSLIQLSYTGALIENNSGYNHVRMNGIRMAGNNVRIAKNRVIGNYSRQQFQMPGKNIAVPTPLLVIPNIY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34405,63060 Da
isoelectric point:5,60418
aromaticity:0,07477
hydropathy:-0,03707

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
USL86287.1
1 321
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USL86287.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4478
Central domain 11 203 194 0,0068
C-terminal 204 321 117 0,9961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS-CHD2B1
[NCBI] 		2865803 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USL86287.1 [NCBI]
Genbank nucleotide accession
MZ234026 [NCBI]
CDS location
range 18613 -> 19578
strand +
CDS
ATGGGTGCTGGAATACTTATCGACTACAACGACGGTAGACCTGTCATGGAGATAACCGCGGGCCTTCGCGCTCCGTCGTTCTGCACTACCTTTAATCAGCGCTGTCAGTCTGACAAGACGCTGACCATTAACACACCGCTGACACCGGGGTCCGAACTGGTCGTTGCCCTAACTAATCCGGTAGAAGTGATGGAAGTATTCGACCAGACCCTGGTCTTGCCAGACCCGTTTTATGTGACGTCGATACAACGTAACGGGGATGGCGGAATCACCTTGCGCGGTGAGGATGCCTATAACGCATACAGCGGGCTTCCAACATGGGGCGGGGTGATTATGGAAGTGCTGCCGGTTGGGTCACGCAATGCGGGCTTACTGGTAGCTAACTCAACGGACTTCACCGCAATATCCAACGTCGCACGGCTAATGACCTGCCGATATGCGCAGCGCGTGCATGTAAACGGAAGTATGCCGCTACCCGTCGGCGGTGTCCCGTTCGCTCGCTGGGACGACGGCAACGTATCGGTTGGCTTCGATGGCGGAAGTATTATCGTCCGTAATGCGTCCTATGGCGGGATTGACGACGTAGGCGCTGCCGTCGACATGGACCTGGTTATATTCAACAATACGCCGCCATCACCGGGGACCGGTATCACCATGACTAACAACCAGGGGCAGGTCACGTTCTCGACGGTAAACAAGCCGTTTGTCTACGACCGCACGATTAATATCGGTGGCGGCGACCAGCACATCGGTAATAGTCTGATCCAGCTTTCATATACCGGTGCGCTCATTGAGAACAACAGCGGCTATAACCATGTGCGCATGAACGGGATACGAATGGCGGGTAATAATGTGCGCATCGCCAAAAACCGCGTTATTGGCAACTACTCACGGCAGCAATTCCAAATGCCGGGCAAAAATATTGCCGTACCCACCCCGCTACTAGTCATCCCTAACATCTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eb39efdbf4d4dab0960a07a3d04125101da70463d54ad663c09708fd4d424575
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8202
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Naturally bred epsilon2 phages have an improved host range and effectivity in uropathogenic E. coli over their ancestor phages Saez,D., Loose,M., Mutti,M., Visram,Z., Hitzenhammer,E., Dippel,D., Tisakova,L., Schertler,S., Wittmann,J., Corsini,L. and Wagenlehner,F. 2020-05-19 — GenBank