Protein

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Genbank accession
ADP00251.1 [GenBank]
Protein name
tail tube protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,72
Protein sequence
MSSVTQTIPTLTGGLSQQPDELKIPGQVSIATNVIPDVTHGLLKRPGGQLVASISDNGTSALNSQTNGKWFSYYRDETESYIGQVSRSGDINMWRCSDGAAMVVNYDSGTASALATYLTHTNDQDIQTLTLNDFTFITNRTKTVAMSSTVETVRPPEVFIDLRATAYARQYAVNLYDNTNTTTETTATRISVDLVKSSNNYCNASDGTLPSRANRISATGRCTINAGDGRDAYAPNVGTRIFDIDDGASLTDEALSGNHTYTIDVKAANGSSVNRGTNLYFRIRTTGQSVPFTTGAGNEQVTTYQARYTTTFDLLYGGSGWQQGDYFYVWMDDGYYKVVIEAISTTQIQANLGLIRPNPTPFDTETTITASGILGDIRQAIIDTGNFTSANVQQIGNGLYITRPSGTFNATAPTSDLLKVMSSEVKSVDDLPDQCKHGYVVKVANSEADEDDYYVKFFGNNDRDGDGVWEECAKPGRNIEFDKGTMPIQLVRQANGTFLVSQATWENAEVGDDLTNPNPSFVGKTVNQLVFFRNRLVFLSDENVIMSRPGEFFNFWSKTATTFTPMDVIDLSCSSEYPAIVYDGIQVNAGLLLFTKNQQFMLTTDSDILSPETAKLNAVASYNFNEKTNPINLGTTVAFIDNANQFTRFFEMSNVLRQGEPDVVDQSKVISRLLDKDISLVSESRENSAVFFSKKDTDTIYCFRYFTSGEKRLLQAWCTWTVVGNIQYHCMLDDALYVITRNNNKDQMVKYSLKLDDSGHFVTDTRDTADTKDDYVYRVHLDHASSVTAASGTYSSANIKTTIPKPNGYESTKQLVAYETDAGNDLGRYALITVNGSNLEIPGDWSNNTFVIGYLYEMDVQIPTLYVSRVEGDKYRSDAKSSLIIHRIKFSFGPLGVYSTTLQRVGKPDYTETKELALAGFVSASRLPIVNEVIETVPCYERNTNLTVNVKSSHPAPATLYSLAWEGDFTNRFYRRV
Physico‐chemical
properties
protein length:977 AA
molecular weight: 108046,77250 Da
isoelectric point:4,88710
aromaticity:0,10133
hydropathy:-0,35046

Domains

Domains [InterPro]
IPR058003
TTP
1–189
IPR058003 DC_1232 IPR058003
IPR058003
TTP
1–180
IPR058003
ADP00251.1
1 977
Architecture
TTP
STR
TTP
TTP 1-189 | STR 197-356 | TTP 363-975 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADP00251.1
1 977
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,8323
Central domain 147 345 200 0,7261
C-terminal 346 977 631 0,3020
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-345
C-terminal
346-977

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-SSP2
[NCBI] 		444876 Uroviricota > Caudoviricetes > Autographivirales > Tritonvirus > Tritonvirus PSSP2
Host Synechococcus sp. WH 8017
[NCBI] 		166321 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADP00251.1 [NCBI]
Genbank nucleotide accession
GU071107 [NCBI]
CDS location
range 29706 -> 32639
strand +
CDS
ATGTCTAGTGTTACTCAAACAATACCAACTCTGACTGGAGGGTTATCTCAACAGCCAGATGAACTAAAAATTCCCGGACAAGTTAGTATCGCTACTAACGTAATACCTGATGTAACACATGGCTTACTGAAACGTCCGGGTGGGCAGTTAGTTGCATCTATTAGTGATAATGGAACTTCAGCTTTAAATTCCCAAACAAACGGTAAATGGTTTTCTTATTACCGTGATGAAACAGAAAGTTATATAGGACAAGTCAGTAGATCTGGCGATATAAATATGTGGAGATGTAGTGACGGTGCAGCGATGGTTGTTAACTATGACTCAGGAACTGCAAGTGCTTTAGCTACATATTTAACTCACACCAATGATCAAGATATACAGACCTTAACTTTAAATGACTTCACTTTTATAACTAACAGAACTAAGACAGTAGCTATGTCTTCTACTGTAGAAACTGTTAGACCTCCTGAAGTTTTTATTGATTTAAGAGCTACAGCTTATGCAAGACAATATGCTGTAAATCTATATGACAACACAAACACAACAACTGAAACTACAGCCACAAGAATTAGTGTTGACCTAGTTAAGTCAAGTAATAACTATTGTAATGCTAGTGATGGTACTTTACCATCTAGAGCAAATAGAATATCTGCTACTGGTAGATGTACAATTAATGCTGGAGATGGAAGAGATGCATACGCACCAAACGTAGGAACTAGAATATTTGATATTGATGATGGAGCAAGTCTTACAGATGAAGCTTTATCTGGAAACCATACTTATACTATTGATGTTAAAGCTGCTAATGGTAGCTCAGTAAATAGAGGAACCAATTTATATTTTAGAATTAGAACCACTGGACAGTCAGTTCCGTTTACAACTGGTGCTGGAAATGAACAAGTAACTACATATCAAGCAAGATATACAACTACCTTTGATCTTTTATATGGTGGTTCTGGTTGGCAACAAGGTGATTATTTCTATGTTTGGATGGATGATGGCTATTACAAAGTAGTTATTGAAGCTATTAGTACTACACAAATACAAGCAAACTTAGGATTAATTAGACCTAACCCAACACCTTTTGATACTGAAACTACAATCACTGCTTCAGGAATACTTGGAGATATAAGACAAGCAATTATAGATACTGGTAATTTTACTTCTGCTAATGTTCAACAAATTGGTAATGGTTTATATATAACCAGACCATCAGGTACATTTAACGCTACAGCTCCTACAAGTGACTTACTTAAAGTCATGTCTAGTGAAGTTAAAAGCGTAGATGATTTACCAGATCAATGTAAACATGGTTATGTAGTTAAAGTAGCTAACAGTGAAGCAGACGAAGATGATTACTATGTAAAATTCTTTGGTAATAATGACAGAGATGGTGATGGAGTTTGGGAAGAATGTGCAAAACCCGGTAGGAATATAGAGTTTGATAAAGGCACTATGCCTATACAATTAGTTAGACAAGCTAATGGTACATTTTTAGTCTCACAAGCTACTTGGGAAAATGCTGAAGTAGGAGACGATTTAACTAACCCAAACCCTTCCTTTGTTGGTAAAACAGTTAATCAATTAGTTTTCTTTAGAAACAGATTAGTATTCTTAAGTGATGAAAATGTAATTATGTCAAGACCGGGAGAGTTTTTCAACTTCTGGTCTAAGACTGCTACGACTTTCACACCTATGGATGTTATAGATTTATCTTGTAGTTCTGAATATCCAGCAATTGTTTATGACGGTATTCAAGTAAATGCTGGATTACTATTATTTACTAAAAATCAGCAATTTATGCTGACTACTGACAGTGATATTTTAAGTCCAGAAACTGCAAAGCTTAATGCAGTAGCATCATATAACTTTAATGAAAAAACTAATCCAATTAATTTAGGAACTACAGTTGCGTTTATAGATAATGCTAATCAATTTACTAGGTTTTTTGAAATGTCTAATGTTCTTAGACAAGGAGAACCAGATGTAGTTGATCAAAGTAAAGTTATTTCTAGACTATTAGATAAAGATATAAGTTTAGTATCTGAATCCAGAGAAAACTCAGCTGTATTTTTTAGTAAAAAAGATACAGATACAATTTATTGTTTTAGGTATTTCACTTCTGGTGAGAAACGATTACTACAAGCTTGGTGTACTTGGACTGTAGTTGGTAATATCCAATATCATTGCATGCTAGATGATGCTTTATATGTAATTACACGTAATAACAATAAAGATCAGATGGTTAAATATTCTTTAAAACTGGATGATAGTGGTCACTTTGTAACTGATACAAGAGACACTGCTGATACAAAAGATGACTATGTATATCGTGTTCATTTAGATCATGCTTCGTCAGTTACAGCAGCTTCAGGTACATATAGTAGTGCAAACATTAAAACTACTATTCCTAAACCAAATGGTTATGAAAGCACTAAACAGTTAGTTGCCTATGAAACTGATGCTGGTAATGATCTTGGTAGATATGCCTTAATTACTGTTAATGGTAGTAATTTAGAAATTCCGGGAGATTGGTCAAACAATACTTTTGTTATTGGATATTTATATGAGATGGATGTTCAAATTCCTACCTTATATGTAAGTAGAGTAGAAGGTGATAAGTACCGATCAGATGCTAAATCATCCTTAATTATTCATAGGATTAAATTTAGCTTTGGACCATTAGGAGTATATTCAACAACCTTACAAAGAGTAGGTAAACCTGACTACACAGAAACTAAAGAACTAGCTCTAGCTGGTTTTGTATCTGCTAGTAGATTACCGATAGTAAATGAAGTTATAGAAACAGTACCTTGTTACGAGAGAAATACAAACTTAACAGTAAACGTTAAATCATCACATCCCGCACCAGCCACATTATATTCATTGGCATGGGAAGGAGACTTTACAAACAGATTTTATAGACGTGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c3cc1e3e7c1dfd305e913f5d0ebec5332dd57b758a2cd844ef2b57644827294
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7694
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-SSP2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank