Protein

View in Explore
Genbank accession
AGC36062.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTQEMELIRGSKGGGKGKGGGGSNAENTLRSKARVRMVEIVSEGPCVGLIDSLGNVLGSSVYGKGVHFEQTPVINENSSRNFQNVIIDQRLGYPDQAHLTGFPQVETPFAVDTQVKANTGPVVRTINEENADSVRVIIKLPALVKQNKKTGKLGTASVSYAIDVRGYQGSWQRAHTENLVNQKCVSAVQRAHRIELPLGGHPWDIRVVRLTEDSDSDTLSNDTIFESYTVVVEGKFTYPHTALVALEVNAEDMGQSVPARNYRYRGLIISVPSNYNPITRTYSGFWDGTFKQAWTNNPAWIFYDLLTNDRYGLGEFVSPQIVDKWSLYHIAQYCDEQVKSGFKNADTGLPIYEPRYTYNGVLRSREDAWRVLQQISTAWRGMAYWSLGQVFATADMPADPVKLFSPANVVGDFNYSGTSQKARHTVALVSYNNPNDFYRPDVEPVPHEEGLRRWGWREKQVTLAGCTSRGLAHRYGKWILDVEQNETETVDFSASWDSTDVRPGDIITIADPAKAQIRLGGRLKAAEETQLWLDGPFVPAAGETYQVYVTLPNGQVKLCDISHFANELFKDGESIGYDRIVLAEPLVELPLVNSMWVMRGTDVQPRFYRIITIKEDKKNIFKITALFHDPNKYARVEDIGSLQPTSYTRPSSESLPVENLQVHEVSYLENGLPKSTLTLSWSNPRDFLTKEYEVAMLSPTSGYNIVGTTQNNSIDITELPIGEYTFYVYAISFSSVRSQPATLDYEIAGWAVAAAPTVSNLQLEDSEDGVHFSGSTANISWFNNFPVTTSVTADGAAVANVRSPFYDFNTVKVWDTTTGTLLRTQKVESSIYGYTIEMNAADTKRAGLAGPTRTLRFDVTVTDTLARESNPATISVSNPTPAAFNPTVFVAVNNLHVSLPSPVDTDFAGILVWIETNDTFDPYATTPRYDGAGGAFVFPGEELQTYYIRAAAYDTFGKTGLNISPAIMVSTTAMFETDPPAIPTGLAVTTSFVDGVARVSATWDANTETDVVAYDFAIKQGSGNWVALPVAQNSCEFDAIPGVAYEIKVRARDRLGNVSDYCAALTVTAIVDTEAPSVPLSVGAVGLFRSIWVDWDLSPEADVDFYEVEASKGGLATIYFCKAPAFIHSSLVVGDEWSYRVRAVDTSQNRSDWGAVVTATVGAINPGDLPPDALISTFALIDEAFIESAHIVEIDAGKIKAGSILSGSVIVATSGGNIPLANIGAGGDPADTINNGTTQIEPGMIKIASGISLADWRYGGDETMINGGALATNSVAANVLNIGMRGITTDGLNFEHNSPAINSVAWTSGTIRYMGDDGNPANRAITAGNAAWMTGFLYLVWIKGANAITATTDPAVAYGANAVILALYLGGKDLTANYGRTTIDGSNIKTGTITATAMSVSSLSAISSNIGTITSGLMQSTDGKMQIDLTNKRILIAD
Physico‐chemical
properties
protein length:1439 AA
molecular weight: 156061,00650 Da
isoelectric point:4,91580
aromaticity:0,09382
hydropathy:-0,14663

Domains

Domains [InterPro]
IPR053171
Unmapped
9–750
IPR053171 DC_1241 IPR013783 IPR013783
DC_0129
STR
23–843
DC_0129 IPR036116
IPR055385
ATT
106–234
IPR055385 IPR032876 DC_1500
IPR036116
STR
1069–1162
IPR036116
AGC36062.1
1 1439
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
RBD
STR 23-105 | ATT 106-234 | STR 235-365 | ATT 366-516 | STR 517-843 | ATT 870-977 | STR 978-1166 | RBD 1167-1435 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGC36062.1
1 1439
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,9640
Central domain 13 211 200 0,0486
C-terminal 212 1439 1227 0,0578
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-211
C-terminal
212-1439

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph10
[NCBI] 		1220717 No lineage information
Host Rhizobium etli CFN42
[NCBI] 		347834 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Rhizobiaceae > Rhizobium > Rhizobium etli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGC36062.1 [NCBI]
Genbank nucleotide accession
JX483881.1 [NCBI]
CDS location
range 15622 -> 19941
strand +
CDS
ATGAGCACTCAGGAAATGGAGCTCATTCGCGGCTCAAAGGGCGGTGGCAAGGGCAAGGGCGGTGGTGGCTCGAACGCAGAGAACACGCTGCGCTCGAAGGCGCGCGTGCGCATGGTCGAGATCGTGTCGGAAGGCCCCTGCGTCGGTCTGATCGACAGCCTTGGCAACGTGCTCGGCTCGAGCGTCTACGGCAAGGGCGTGCATTTCGAGCAGACGCCGGTCATCAACGAAAACAGCAGTCGGAACTTCCAGAACGTCATCATCGACCAACGCCTCGGTTATCCCGACCAGGCGCACCTGACGGGCTTTCCGCAGGTCGAGACGCCGTTTGCGGTCGACACCCAGGTCAAGGCCAACACCGGCCCGGTCGTGCGCACAATCAACGAAGAAAACGCCGACTCCGTGCGCGTCATCATCAAGCTGCCGGCGCTCGTCAAGCAGAACAAGAAGACCGGCAAGCTCGGCACTGCGTCGGTCTCCTATGCGATCGACGTGCGCGGCTATCAAGGCAGCTGGCAGCGTGCCCATACCGAGAACCTGGTCAACCAGAAATGCGTCTCGGCCGTCCAGCGCGCCCACCGCATCGAGCTGCCGCTCGGCGGTCATCCGTGGGATATCCGCGTTGTCCGCCTGACCGAAGACAGCGACAGCGACACGCTCTCCAACGACACCATCTTCGAGAGCTATACGGTCGTCGTCGAGGGCAAGTTCACCTATCCGCACACCGCGCTGGTCGCGTTGGAAGTTAACGCCGAGGACATGGGTCAGTCGGTGCCGGCGCGTAACTATCGCTACCGCGGCCTGATCATTTCCGTGCCGTCGAACTACAACCCGATCACCCGCACCTATTCCGGCTTCTGGGATGGCACGTTCAAGCAGGCCTGGACCAACAACCCGGCCTGGATCTTCTATGATCTGCTGACCAATGACCGCTACGGCCTTGGCGAGTTCGTCTCGCCGCAGATCGTCGACAAGTGGTCGCTCTACCATATCGCCCAGTATTGCGACGAGCAGGTCAAATCGGGCTTCAAGAACGCCGACACCGGCCTGCCGATCTATGAGCCCCGCTATACCTATAACGGCGTCCTGCGGTCGCGTGAGGACGCCTGGCGCGTGCTCCAGCAGATCTCGACGGCTTGGCGCGGCATGGCCTACTGGTCGCTCGGCCAGGTGTTTGCGACCGCTGACATGCCGGCCGACCCGGTCAAGCTGTTCTCGCCGGCCAACGTCGTCGGCGACTTCAACTATTCCGGCACCTCGCAGAAGGCGCGCCACACGGTCGCGCTCGTCAGCTACAACAACCCGAACGACTTCTATCGTCCGGACGTCGAGCCCGTTCCGCACGAGGAAGGCCTTCGCCGCTGGGGCTGGCGCGAGAAGCAGGTGACGCTCGCCGGCTGCACGTCGCGCGGCCTGGCGCACCGCTATGGCAAATGGATCCTCGATGTCGAGCAGAACGAGACCGAGACGGTCGATTTCTCCGCATCCTGGGATTCGACCGACGTCCGGCCGGGCGACATCATCACGATCGCCGATCCTGCCAAGGCACAGATCCGCCTGGGCGGCCGCCTGAAGGCTGCCGAGGAAACTCAGCTCTGGCTCGACGGCCCCTTCGTGCCGGCTGCCGGCGAGACCTACCAGGTCTATGTCACCCTGCCGAACGGCCAGGTGAAGCTCTGCGATATCTCGCACTTCGCCAACGAGCTGTTCAAGGACGGCGAAAGCATTGGTTATGATCGCATCGTGCTGGCCGAGCCGCTCGTCGAGCTGCCGCTGGTCAACTCGATGTGGGTGATGCGTGGCACCGATGTGCAGCCGCGCTTCTACCGCATCATCACCATCAAGGAAGACAAGAAGAACATCTTCAAGATCACGGCGCTGTTCCATGATCCGAACAAGTATGCCCGCGTCGAGGATATCGGCTCGCTGCAGCCGACCTCCTACACCCGCCCGTCGAGCGAGAGCCTGCCGGTCGAGAACCTGCAGGTTCACGAGGTCAGCTATCTCGAAAATGGGCTGCCCAAATCGACACTGACGCTCTCCTGGTCGAACCCGCGCGACTTCCTGACGAAGGAGTATGAAGTCGCGATGCTGTCGCCCACGAGCGGCTATAACATCGTCGGCACGACGCAGAACAACTCGATCGACATCACCGAGCTGCCGATCGGCGAATACACCTTCTATGTCTACGCCATCAGCTTCTCCTCGGTGCGCTCGCAGCCGGCGACGCTGGATTATGAAATCGCCGGCTGGGCAGTTGCCGCGGCGCCGACCGTCTCGAACCTTCAGCTCGAGGACAGCGAAGACGGCGTGCATTTCTCGGGCTCAACGGCCAACATCTCCTGGTTCAACAACTTCCCGGTCACGACCTCGGTTACGGCCGACGGCGCGGCCGTCGCCAATGTCCGCAGCCCGTTCTACGACTTCAACACTGTCAAGGTCTGGGATACGACCACGGGCACGCTGCTGCGCACGCAGAAGGTCGAGAGCTCGATCTACGGCTACACCATCGAGATGAATGCAGCCGACACCAAGCGCGCGGGACTGGCCGGTCCTACCCGCACGCTGCGCTTCGACGTTACCGTGACCGACACGCTGGCGCGCGAGAGCAACCCCGCGACGATCTCGGTCTCCAACCCGACGCCGGCCGCCTTCAATCCGACCGTCTTCGTTGCCGTCAACAACCTGCATGTGTCGTTGCCGTCGCCTGTTGACACCGACTTTGCCGGCATCCTGGTCTGGATCGAGACCAATGACACGTTCGATCCCTATGCGACCACGCCGCGTTATGACGGCGCGGGCGGCGCCTTCGTCTTCCCTGGCGAGGAGCTGCAGACCTACTATATCCGCGCGGCCGCATATGACACCTTCGGCAAGACCGGGCTGAACATCTCGCCGGCGATCATGGTCTCGACGACGGCGATGTTTGAGACCGATCCGCCTGCGATCCCGACAGGCCTGGCTGTCACCACGAGCTTCGTCGATGGCGTTGCCCGTGTCTCTGCGACCTGGGATGCCAACACCGAGACCGACGTCGTCGCCTATGACTTTGCGATCAAGCAGGGTTCGGGCAACTGGGTCGCTCTGCCGGTGGCGCAGAACTCCTGCGAGTTCGATGCCATTCCGGGCGTCGCCTATGAGATCAAGGTCCGGGCGCGCGATCGGCTGGGCAACGTCTCCGACTATTGCGCCGCACTCACGGTTACGGCGATCGTCGATACCGAGGCGCCGTCTGTGCCGCTCAGTGTCGGCGCCGTCGGCCTGTTCCGCTCGATCTGGGTGGACTGGGATCTGTCTCCGGAAGCCGACGTCGATTTCTACGAGGTCGAGGCGTCGAAGGGCGGTCTGGCGACAATCTATTTCTGCAAGGCGCCGGCCTTCATCCACTCCTCGCTGGTCGTCGGCGATGAATGGAGCTATCGCGTGCGCGCCGTCGACACCTCGCAGAACCGCAGCGACTGGGGTGCGGTCGTGACCGCGACCGTCGGCGCCATCAATCCTGGCGATCTGCCGCCTGACGCGCTGATTTCGACCTTCGCGCTGATCGACGAGGCGTTCATCGAGAGCGCCCATATCGTCGAGATCGACGCCGGCAAGATCAAGGCCGGCTCGATCCTGTCGGGCAGTGTCATCGTTGCGACCAGCGGCGGAAACATTCCGCTCGCCAATATCGGCGCGGGCGGCGACCCGGCCGACACGATCAACAACGGCACCACCCAGATCGAGCCTGGCATGATCAAGATTGCCAGCGGCATCTCGCTCGCCGACTGGCGTTATGGTGGCGACGAAACCATGATCAACGGTGGGGCACTGGCTACCAACTCGGTTGCAGCCAATGTGCTGAACATCGGCATGCGCGGCATCACGACCGACGGCCTGAATTTCGAGCACAACAGCCCGGCGATCAACAGCGTTGCCTGGACGAGCGGCACCATCCGCTACATGGGTGACGACGGTAATCCGGCCAACCGCGCCATCACGGCCGGCAATGCTGCCTGGATGACCGGCTTCCTCTATCTCGTCTGGATCAAGGGTGCCAACGCGATCACGGCAACGACCGACCCGGCTGTCGCCTACGGCGCCAATGCGGTGATCCTGGCGCTCTACCTGGGCGGCAAGGATCTGACGGCCAATTACGGTCGCACGACGATCGACGGCTCGAACATCAAGACCGGCACCATTACGGCAACGGCGATGTCGGTCTCGTCGCTGTCGGCGATCTCCTCCAACATCGGCACCATCACTTCGGGTTTGATGCAGTCGACAGACGGGAAGATGCAGATCGACCTGACCAACAAGCGTATTCTGATTGCGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
193beec90a7fabde97df541f521ed35b223895ea4b25a3be3c9a5071fefbb880
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8184
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50