Protein

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Genbank accession
YP_009876128.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MGVNRYKGTCTSNAALVNKYIGTAYDHVKNVSDNIEDVKTVADALGEDFPDNGLDILVENIDDVVTVATNIDDVITVAGISADVTTVAGIEQEIIDVPSYTAQAIDAANAAEQDATEAEASNLKAQKWAEENEDVEVDPGKYSSKHWATKAEEVVLDAATETWVESGAPEIIATGSTTPRRLDDRFADEVNVKDFGAVGDGITDDTAAIQAAVDLASNVKGAVIFPHGIYLLDTMTDDYYVNLKPNVSIHILDGAKVIAGTGYNIGTSKLKAIFNQVDSGTSLGNISVKGEFDFNGTNNLVTDVTGTKNAAVSVLRAESVVINIKATNHAGRQVVQLGDTANTIKTVIIERLECENVGAGLAGNVNQTDHSSIYAVCDDLIVKSMSVKNDIEPTQTVTALETHSVRTSVSNLHTSNVGISVIVAAVEQNIESFVMDNCVLRGDQMLNTWTFPAMTLDHLHVGDSNTFTKTFGTLSVVDLSTNMQGSGDNVRIGAMSFNNTKLTYDAVTPVILLGRWRTTSVGECVVARCDARFIQTGNIFDNNSSLYVSGSITEHTNQNAAPGFNQLVRLSGANAFATVIIQGMKATPKSGSSSATVGISVECPVNTKMDIVDNAFNGTISTDIFDNSSPSPSSNFYVRHRGDLVPAAGLKAKAGSEVFLETSGNLYRLEANGSDWKLFPLVPRTSVGNPIGAILPNHVGEELLGGGGTTWYKSTGLTNNDWVALN
Physico‐chemical
properties
protein length:726 AA
molecular weight: 77050,85270 Da
isoelectric point:4,57511
aromaticity:0,06061
hydropathy:-0,08444

Domains

Domains [InterPro]
DC_0636
STR
3–695
DC_0636
IPR012334
STR
171–637
IPR012334
IPR011050
STR
187–551
IPR011050
IPR024535
ENZ
190–418
IPR024535
YP_009876128.1
1 726
Architecture
STR
STR 3-695 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009876128.1
1 726
Domain Start End Length (AA) Confidence
N-terminal 1 204 204 0,9819
Central domain 205 624 421 0,9741
C-terminal 625 726 101 0,9629
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-204
Central
205-624
C-terminal
625-726

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VspP_pVa5
[NCBI] 		1913109 Uroviricota > Caudoviricetes > Schitoviridae > Galateavirus > Galateavirus PVA5
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009876128.1 [NCBI]
Genbank nucleotide accession
NC_049379.1 [NCBI]
CDS location
range 7938 -> 10118
strand +
CDS
ATGGGTGTAAACAGATACAAGGGGACGTGCACTTCGAATGCAGCCCTAGTGAATAAGTACATAGGTACTGCTTATGATCACGTGAAGAATGTGTCAGATAACATTGAAGATGTTAAGACAGTGGCAGACGCACTAGGTGAGGACTTCCCTGATAATGGTTTAGACATCTTAGTGGAGAATATCGATGATGTGGTAACAGTTGCTACAAATATTGATGATGTAATTACGGTTGCAGGTATTAGTGCGGATGTAACAACTGTTGCAGGTATTGAACAGGAGATCATTGATGTACCTAGCTATACAGCTCAAGCAATTGATGCTGCTAATGCCGCAGAACAGGATGCTACAGAAGCTGAAGCTTCTAACCTTAAAGCACAGAAGTGGGCTGAGGAAAACGAGGATGTTGAGGTAGACCCTGGCAAGTATTCTTCTAAGCACTGGGCCACAAAAGCTGAAGAGGTAGTATTGGATGCTGCTACTGAGACTTGGGTTGAAAGTGGTGCACCTGAGATTATAGCAACAGGCTCAACAACTCCACGTAGGCTTGATGATCGTTTTGCGGATGAGGTTAATGTGAAGGACTTCGGCGCAGTAGGTGATGGCATTACAGATGATACAGCAGCAATACAAGCTGCTGTTGACTTAGCCTCTAACGTTAAGGGCGCAGTAATATTCCCTCACGGTATCTACCTTTTAGATACAATGACTGACGACTACTATGTAAACTTGAAACCTAATGTGAGTATCCATATTTTAGATGGAGCTAAGGTTATAGCAGGTACGGGGTATAATATAGGAACCTCAAAACTAAAAGCTATCTTTAATCAAGTAGACAGTGGGACATCTTTAGGCAACATATCTGTAAAAGGTGAGTTTGATTTCAATGGAACGAATAACCTAGTAACAGATGTAACTGGTACGAAGAATGCAGCTGTTTCTGTATTACGTGCTGAGTCAGTAGTTATTAATATCAAAGCAACCAATCATGCTGGACGCCAAGTGGTTCAACTTGGGGATACTGCTAACACCATTAAAACGGTTATCATTGAGCGTCTTGAGTGCGAGAATGTAGGAGCAGGTCTTGCAGGTAATGTGAATCAAACGGATCATTCAAGTATCTATGCAGTGTGTGATGATCTCATTGTTAAGAGTATGTCAGTAAAAAATGATATTGAACCAACACAAACTGTAACTGCTCTTGAGACGCATTCGGTCAGAACATCAGTGAGTAACCTTCATACATCTAATGTAGGTATCTCAGTAATCGTAGCCGCAGTTGAGCAAAACATTGAAAGTTTTGTAATGGATAACTGTGTGTTACGTGGAGATCAGATGCTTAATACGTGGACTTTCCCTGCTATGACGTTAGATCACCTGCACGTTGGAGACAGTAACACATTTACTAAAACCTTTGGCACACTTTCAGTTGTAGATCTAAGCACTAACATGCAAGGTTCTGGTGATAATGTGCGTATTGGAGCCATGTCGTTTAACAATACCAAACTCACCTATGACGCTGTAACTCCTGTTATCCTACTAGGTCGTTGGAGAACAACCAGTGTAGGTGAATGTGTAGTTGCAAGATGCGATGCACGTTTTATTCAAACTGGTAACATCTTTGATAACAATTCGTCTTTGTATGTTAGCGGTTCTATCACAGAACATACCAATCAAAACGCTGCACCCGGTTTTAACCAGTTGGTAAGGTTGTCTGGAGCGAATGCTTTCGCAACAGTTATTATTCAAGGTATGAAGGCCACACCTAAAAGCGGCTCTTCAAGCGCAACAGTAGGTATCTCGGTAGAGTGTCCCGTTAATACGAAAATGGATATTGTTGACAACGCCTTTAACGGCACTATTTCAACAGATATTTTTGACAATAGTTCTCCTTCCCCGTCATCTAACTTCTACGTGCGTCACCGAGGAGACCTTGTTCCCGCCGCAGGTTTAAAAGCTAAGGCAGGTTCAGAAGTCTTTCTTGAAACTAGCGGTAATCTGTACCGACTAGAAGCTAATGGCTCAGACTGGAAACTTTTCCCTCTAGTTCCACGTACCTCTGTTGGCAACCCTATTGGAGCAATCCTGCCCAACCACGTAGGTGAAGAACTGCTAGGGGGAGGCGGCACTACTTGGTATAAATCTACAGGACTAACTAATAACGATTGGGTAGCCCTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bca49972667200a8a62e5fc0ac1630607d42ebdd070cc2a86a26a4b83461e527
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7123
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50