Protein

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Genbank accession
QGZ18095.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSYIGKEPADSFISFAKQDFSTSATTSYTLDNAVTNENEIALFINFVRQEPTAAYTASGTTLTLTSATASSDDMYCVYLGQAKQTVNAPDGSVGSSQVAASIITGQTALGATPADTDELLISDAGTLKRVDFSHLKGESNDKYAFVGLSSSQTISDTTLTKITFDSVQVQDGSDFNTTNNRYVVSKAGIYKVSMGISIYNTSNAIDRVQIYINKNGSTITDGVTDDGRSTADHFARSINITVLISCAVNDYIEGQVWHDSTGSSIIDGNKAQLVVNLVKEN
Physico‐chemical
properties
protein length:281 AA
molecular weight: 29942,57950 Da
isoelectric point:4,48661
aromaticity:0,07829
hydropathy:-0,17011

Domains

Domains [InterPro]
DC_1764
ATT
65–172
DC_1764
IPR008983
RBD
142–274
IPR008983
IPR008983
RBD
146–267
IPR008983
QGZ18095.1
1 281
Architecture
ATT
RBD
ATT 65-172 | RBD 173-274 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18095.1
1 281
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,9872
Central domain 115 270 157 0,0041
C-terminal 271 281 10 0,9960
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-270
C-terminal
271-281

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC106P
[NCBI] 		2686460 No lineage information
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18095.1 [NCBI]
Genbank nucleotide accession
MN698244 [NCBI]
CDS location
range 22658 -> 23503
strand -
CDS
ATGTCTTATATTGGTAAAGAACCAGCAGATAGTTTTATTAGTTTTGCAAAGCAAGACTTTAGTACAAGTGCAACTACTTCATACACATTAGATAACGCAGTTACTAATGAAAATGAAATAGCACTATTTATAAATTTTGTAAGACAAGAACCAACTGCTGCATATACTGCTAGTGGTACTACACTAACATTAACATCTGCAACAGCAAGTTCAGATGATATGTATTGTGTGTATCTTGGACAAGCAAAACAAACTGTAAATGCACCTGATGGTTCTGTTGGAAGCTCACAAGTAGCAGCATCTATAATTACTGGTCAAACTGCTTTAGGTGCAACACCAGCAGATACAGATGAGCTTTTAATTTCTGATGCTGGAACATTAAAGAGAGTAGATTTTAGTCATTTAAAAGGTGAAAGTAATGATAAATATGCTTTTGTTGGTTTATCAAGTAGTCAAACAATTTCTGATACTACTTTAACAAAAATAACTTTTGATAGTGTTCAAGTTCAAGATGGTTCTGATTTTAATACAACAAATAATAGATATGTAGTTTCTAAAGCTGGAATTTATAAAGTTTCTATGGGAATAAGTATTTATAATACATCTAATGCTATAGATAGAGTTCAAATTTATATAAACAAAAATGGAAGCACCATTACAGATGGTGTAACAGATGATGGAAGATCAACAGCAGATCATTTTGCAAGATCAATTAATATTACAGTACTAATTAGTTGTGCAGTTAATGATTATATAGAAGGTCAAGTTTGGCATGATAGCACAGGAAGTTCTATTATTGATGGTAACAAAGCTCAATTAGTAGTTAATTTAGTTAAGGAGAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d6318f13e713d3866a9d8028ebba020931a973ab3eb0e9f33a32f96ed7deb875
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8391
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank