Protein

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Genbank accession
YP_009822130.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTAYSLEYTQDRNPMVDYATKNMWGNPELDSQYQIKLSRVSGNQGFINDFPFWGKRHLLPTNLEFYHVFSLAGLDIGFWNMGSRGESWYPHNQWIKASTFARNRGINIDVYAGSGSMWVRDETYIMDTFQGGTLLCIPKNINFPLPVGKELYVHCYTVDINTRNVTDLVKYSVGYVGDVYQKPEDFDRVKLNYDTWKAYGMGQVLFWHNGKTKDITKVSPVPGDMIEASYDPSIEIIASYKYSEMPDYYSELDSKRKVILFPGFRDTPRVYRYYDDCIYYVTNRRNGQMYYFNRNSVDAVRQLTHQDYGMCASYVDYLTDRHINDDKSGMTTIADIDITVAYHKTLWQVPVGPTSSRINDLYLLEDPADILNALTGIHSSIPEWTANKLENSPTNLVLNRDVRYLKTKAIREGLGYNGCAVAMSNTPLYMPYDPPGTPNHKPIYTTPDYTSGLGYRVPPTYVEYSTAYEYGEDGLLLRLRQVINQEWYTPSEDCFYVEWALGKATQKVDYVVSQQDVKIRLGYGFRVYKAPYSQPPEPPEGDGKEIKVSTDGTNPYGENGKEIRVWELDQAEGEDPDIPDGGQITGPWVDITGDETQYEIIDGYIVFRFDTINYMGLVVTDYNHIYNSFNLSHIDNSLSFAITRSWTIGDKILEMEPGQIDIWMNRHPLIENVDYYLDFPNVYITNKMWLVEGAQFFQYRATGLSKNGLVNSSELGFVADSVIGMNGRYNLRIDRPTKTIIGGRLFLTQTLDSGEDINHGRNVKDYNGWPYEVKHIYCANKYVDWYDTYWGYDEARELDKRISDYLTEHVKYKPKTATDTVYMEDDKYRLYSPFLSLIVNELVLGFMDAPPVSGKEVPYPASVVDNLTREHQWLLKYDPIVNDIDLRFFTVQPYNNLETIEVTADQLTFIKTVNDLYLGGKVFIEGYFEVKNV
Physico‐chemical
properties
protein length:933 AA
molecular weight: 107650,58540 Da
isoelectric point:4,92245
aromaticity:0,13934
hydropathy:-0,47889

Domains

Domains [InterPro]
IPR055617
STR
10–932
IPR055617
YP_009822130.1
1 933
Architecture
STR
STR 10-932 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009822130.1
1 933
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7061
Central domain 11 922 913 0,5724
C-terminal 923 933 10 0,3097
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-922
C-terminal
923-933

Taxonomy

  Name Taxonomy ID Lineage
Phage Edwardsiella phage pEt-SU
[NCBI] 		2562142 Uroviricota > Caudoviricetes > Chimalliviridae > Petsuvirus pEtSU >
Host Edwardsiella tarda
[NCBI] 		636 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009822130.1 [NCBI]
Genbank nucleotide accession
NC_048182 [NCBI]
CDS location
range 237133 -> 239934
strand +
CDS
ATGACCGCATATTCGCTTGAATATACCCAAGACAGAAATCCAATGGTCGATTACGCCACGAAGAACATGTGGGGTAATCCTGAACTCGATTCCCAGTATCAGATTAAACTGAGCAGGGTTTCGGGTAACCAGGGTTTCATTAACGATTTCCCTTTCTGGGGTAAGCGACACCTGTTGCCTACCAATTTAGAATTCTATCATGTATTCAGTTTAGCTGGTCTTGATATTGGGTTCTGGAATATGGGAAGTCGTGGAGAGAGCTGGTATCCACACAATCAGTGGATTAAGGCAAGTACCTTTGCTCGTAATCGTGGCATCAATATTGATGTCTACGCGGGTAGCGGTTCCATGTGGGTACGTGATGAAACGTACATCATGGATACGTTCCAAGGCGGTACATTACTGTGCATCCCTAAGAACATTAACTTCCCTCTCCCTGTGGGTAAAGAACTATATGTACATTGTTACACTGTTGATATCAACACACGCAATGTAACTGATCTTGTTAAATACTCCGTAGGGTACGTTGGTGATGTTTATCAAAAACCTGAAGACTTTGATCGCGTTAAGCTTAACTATGATACATGGAAAGCTTACGGCATGGGTCAAGTTCTATTCTGGCATAACGGTAAAACAAAAGACATCACTAAAGTATCTCCGGTTCCTGGTGACATGATTGAAGCAAGTTATGATCCCTCTATTGAAATCATTGCGAGCTACAAGTATTCTGAAATGCCTGATTACTATTCCGAACTGGATAGTAAAAGAAAGGTAATTCTATTCCCTGGGTTCCGAGACACCCCTCGTGTCTACCGTTACTATGATGACTGCATTTATTATGTCACCAACCGTCGTAACGGACAGATGTATTACTTTAACCGTAACTCTGTTGACGCTGTTCGTCAATTGACTCATCAAGATTACGGGATGTGTGCAAGCTATGTTGATTACTTGACCGATCGTCATATTAATGATGACAAGTCTGGGATGACAACTATTGCGGACATCGATATTACGGTTGCCTATCACAAAACACTATGGCAGGTTCCGGTTGGACCTACGTCAAGTCGCATTAACGATTTGTATTTGCTGGAAGACCCAGCAGACATTTTGAATGCACTAACAGGCATTCATTCCTCGATTCCAGAGTGGACAGCTAACAAGCTTGAAAACTCACCTACCAATTTGGTATTGAATCGTGATGTTCGTTATTTGAAGACTAAGGCGATTCGCGAAGGTCTTGGGTATAACGGTTGTGCTGTAGCGATGAGTAATACTCCGCTCTATATGCCGTATGATCCCCCTGGTACACCTAACCACAAACCAATCTACACCACTCCTGACTATACCTCTGGTTTAGGATACCGTGTTCCACCTACTTATGTTGAGTACTCTACAGCGTATGAGTATGGGGAGGATGGATTACTGTTACGTTTACGTCAGGTAATCAATCAAGAATGGTACACCCCAAGTGAAGATTGCTTCTATGTCGAATGGGCATTGGGTAAAGCAACTCAGAAAGTTGATTATGTCGTTTCTCAACAGGACGTCAAGATCAGACTGGGGTACGGGTTCCGAGTGTATAAGGCACCATACTCTCAACCGCCTGAACCACCTGAAGGTGATGGTAAAGAGATTAAAGTAAGTACTGATGGGACTAACCCTTACGGTGAGAACGGTAAAGAGATCCGTGTTTGGGAACTTGATCAAGCTGAAGGGGAAGATCCAGATATTCCTGATGGCGGTCAAATTACCGGACCTTGGGTTGATATCACTGGTGATGAAACACAGTACGAAATTATTGATGGTTATATTGTGTTCCGCTTTGACACCATTAACTATATGGGTCTGGTGGTTACCGACTATAACCATATCTACAATAGTTTCAACTTGTCTCACATTGACAATTCCTTGTCCTTTGCAATTACTCGCTCTTGGACTATCGGGGATAAAATCCTTGAGATGGAACCAGGTCAAATTGATATTTGGATGAACCGTCATCCTCTTATTGAAAACGTTGACTACTATCTTGACTTCCCTAACGTCTACATCACTAACAAGATGTGGTTAGTAGAGGGTGCTCAATTCTTCCAGTATCGCGCTACCGGACTGTCTAAGAACGGGCTGGTTAATTCTAGCGAGCTGGGATTTGTAGCTGACAGTGTTATCGGTATGAACGGTCGTTATAACCTTCGTATCGACAGACCGACTAAGACCATTATCGGTGGTCGCTTGTTCTTAACTCAGACGCTTGATTCTGGTGAAGACATTAACCATGGACGTAACGTAAAGGACTATAATGGTTGGCCTTACGAAGTGAAACACATTTACTGTGCTAATAAATACGTCGATTGGTATGACACTTACTGGGGTTATGATGAAGCCCGTGAACTCGATAAGAGAATCTCGGATTATCTGACTGAACATGTGAAGTACAAACCGAAGACCGCTACTGATACGGTATATATGGAAGATGATAAGTATCGTCTCTATTCTCCGTTCCTTAGTCTCATCGTCAATGAACTGGTATTAGGTTTCATGGATGCGCCTCCGGTGTCTGGTAAAGAAGTTCCTTACCCGGCCAGTGTGGTTGACAACTTGACACGCGAACATCAGTGGTTGTTGAAATACGACCCAATCGTTAATGACATTGATCTCCGTTTCTTTACGGTTCAGCCGTATAACAACTTAGAGACCATTGAGGTGACAGCTGATCAGCTGACGTTCATTAAAACTGTTAACGATTTGTATCTTGGCGGTAAGGTCTTTATCGAGGGTTATTTTGAGGTGAAGAATGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d7a953412a0402b65b6c5a007faef54568d64cdadf2e9ae80423fe541f7bf04
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2652
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50