Protein

View in Explore
Genbank accession
XOT38065.1 [GenBank]
Protein name
tail fiber domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MCDKDTCNDASCCGECEPWNCLEQQVNDILATKEDQLQGYVDEAKDAAAESKASSEASAQSAAESKEFRDEAEVAASTAVAAESVVLGVANTLQDTADKLEQIADELGTAIAGVAVSSWFYTTVSENQTVIPVPAYKNAVDVQSIYIEGARQSPFRGFEFDKTAMTITLAEPLPLGLEIEIILGTYNSDNPNNFAQTLASNNGASLVGTSNGLTVQENLTDLVEQDADFKETFKAHWVNSQADKKEIRFDLPLLFPDYDAILAAHPDWTFIYPGSFCIGDDGNIYIAYGPSNNAATERFVVVYSGNGDYLGYLQTNNGGTGVNGSAVSEGIIVTNYYGSLKLFLGSYDGNLAEFDISAVTYGTMISYSALHQVGLYNQFSFHNGMWAVEQAIPSLGINRQRNAIAYFNSAFALTGFTEFSPYDAGYITSTTTDDGSLQTKRQAICLAPGVLIMAFGGVYITGTTVEAPTNYQGVKAFSTDGHKMVEAVIPPTDFINVLDAKGLTTSRIENEGVCYAKGEVFTLWIYNNRTTPNAYTNGILITKEYSNSPDLDFSEAVTVSPGYDTVRMASGVYPRILAGDRLYNPLTGAAMTSMTEVLDFMRLSGQKAVTIYTSSTGLTDLAGVAYPIGVELHISNLNNQSFSIDQTGPTTRKTVRVTYDTSGYTIVTAASGLETYRLTLNNTDSGSLTQGRIAARAFGGSTLTEAEQILVLDQQSSATAHSLLIGGGSSVFKSATSVSFVTNSSPASLGGTIRWRLDDTSLRPYADNSYNLGNPSLRVAQVFAAIGTINTSDSREKTDPSEISDDILDAWGDVQVITYKWLASIASKGEDSARWHFGVIAQQVRDTFIKHGLDGTAFGLLCYDEWEDEYEPEFTDEIITVNIDGVDTEVTRQVATGNTLLVRAAGNRWGIRPDQCFWLEAAYQRRRVSRIEERLLALESK
Physico‐chemical
properties
protein length:941 AA
molecular weight: 101904,85780 Da
isoelectric point:4,44540
aromaticity:0,09671
hydropathy:-0,16461

Domains

Domains [InterPro]
DC_0539
STR
1–814
DC_0539
Coil
Unmapped
30–50
Coil Coil IPR036388
IPR036388
RBD
778–941
IPR036388
IPR030392
CHP
792–941
IPR030392
cd10144
CHP
792–927
cd10144
IPR030392
CHP
792–853
IPR030392
XOT38065.1
1 941
Architecture
STR
RBD
STR 1-814 | RBD 815-941
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOT38065.1
1 941
Domain Start End Length (AA) Confidence
N-terminal 1 229 229 0,9838
Central domain 230 506 278 0,9797
C-terminal 507 941 434 0,6703
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-229
Central
230-506
C-terminal
507-941

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK8
[NCBI] 		3389964 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOT38065.1 [NCBI]
Genbank nucleotide accession
PQ805430.1 [NCBI]
CDS location
range 72147 -> 74972
strand +
CDS
ATGTGTGATAAAGATACTTGCAATGACGCCTCTTGCTGCGGTGAGTGTGAACCGTGGAACTGCTTAGAACAGCAAGTCAACGACATTCTTGCCACCAAAGAGGATCAACTCCAGGGCTATGTGGACGAAGCCAAAGATGCAGCCGCTGAGTCGAAAGCCTCGTCAGAGGCGTCGGCTCAGTCGGCTGCGGAGTCGAAGGAGTTCCGCGACGAAGCAGAAGTGGCAGCAAGCACGGCAGTAGCCGCAGAAAGTGTTGTACTCGGTGTAGCAAACACGTTACAAGATACCGCAGATAAGCTCGAACAGATTGCTGATGAGCTTGGTACTGCTATTGCTGGTGTTGCTGTATCCTCATGGTTCTATACTACGGTATCTGAAAACCAGACGGTTATTCCTGTACCGGCTTATAAGAATGCTGTGGACGTGCAGTCGATTTATATCGAAGGTGCTCGTCAATCCCCATTCCGTGGGTTCGAGTTCGATAAAACTGCCATGACTATTACGCTGGCTGAACCTCTGCCGTTGGGTTTAGAAATTGAAATTATCCTGGGTACTTATAACTCAGATAATCCTAATAATTTTGCTCAAACTCTGGCTTCCAACAATGGTGCAAGTCTTGTTGGTACTTCCAATGGTCTTACAGTACAAGAGAATCTGACTGATCTAGTAGAACAGGATGCGGACTTTAAAGAAACCTTTAAAGCTCACTGGGTTAACAGCCAGGCAGATAAAAAAGAAATTCGTTTTGATCTACCATTACTATTTCCAGATTATGATGCAATTTTAGCCGCACATCCTGACTGGACGTTTATCTATCCAGGGTCATTCTGCATCGGGGACGATGGCAATATCTATATTGCGTATGGCCCAAGTAACAACGCAGCAACGGAACGTTTCGTTGTAGTTTACTCAGGCAATGGTGATTACTTAGGGTATCTCCAGACTAATAATGGAGGCACTGGGGTAAATGGTTCTGCAGTATCCGAAGGGATTATCGTAACCAATTACTATGGTTCACTTAAGTTATTCCTGGGGTCTTACGATGGTAACTTAGCTGAGTTTGATATCTCAGCAGTGACCTATGGCACTATGATTAGTTATTCAGCTTTGCATCAGGTAGGTCTATATAACCAGTTCTCCTTCCACAATGGAATGTGGGCAGTTGAGCAGGCCATCCCATCGTTGGGCATTAACCGCCAACGTAATGCTATTGCATATTTCAACTCCGCATTTGCATTAACTGGTTTCACGGAATTTTCTCCGTATGATGCTGGATACATCACGTCAACTACTACTGATGACGGGTCACTTCAAACTAAGCGACAAGCAATCTGTTTAGCTCCCGGTGTTTTGATCATGGCATTTGGTGGTGTTTACATTACAGGAACAACTGTAGAAGCGCCTACTAATTATCAGGGGGTAAAAGCATTTAGCACTGATGGGCATAAAATGGTAGAGGCAGTAATACCCCCTACTGATTTTATTAATGTTTTGGATGCTAAAGGGTTAACGACCTCTCGTATAGAAAATGAGGGTGTTTGCTACGCAAAAGGTGAAGTATTCACCTTATGGATTTATAACAATAGAACTACCCCAAATGCGTATACTAACGGCATCCTGATTACTAAAGAATATTCGAACTCCCCGGATTTGGATTTTTCTGAGGCGGTTACGGTATCCCCAGGTTACGACACTGTTCGAATGGCTTCTGGGGTTTATCCTCGCATTCTCGCAGGCGACAGACTCTATAATCCGTTGACTGGTGCTGCCATGACTTCAATGACAGAAGTATTGGACTTTATGCGCCTGTCTGGACAAAAAGCAGTTACTATTTATACGTCAAGCACTGGTCTTACAGACCTGGCTGGGGTTGCTTATCCAATTGGGGTAGAACTCCACATTAGCAACCTAAATAACCAGAGTTTTTCTATAGATCAGACCGGGCCAACTACCCGTAAAACTGTGCGAGTAACTTACGATACCTCCGGCTATACCATAGTCACAGCAGCTTCTGGTTTGGAGACTTACCGTTTAACTCTAAACAATACTGACTCTGGTTCTTTAACTCAGGGGCGTATTGCTGCCAGAGCTTTTGGTGGTAGTACACTCACTGAGGCAGAGCAGATTCTTGTTCTGGATCAGCAGAGTTCTGCAACTGCTCACTCTCTTCTTATCGGGGGTGGTTCCTCAGTCTTTAAGAGTGCGACTTCTGTAAGTTTTGTGACTAACTCATCACCTGCCAGTTTAGGTGGTACTATCCGTTGGCGTTTGGATGACACATCCCTTCGTCCGTATGCAGATAACAGCTATAACTTGGGTAACCCATCGTTACGTGTGGCTCAAGTATTCGCAGCAATTGGTACTATTAATACGTCTGATTCCCGTGAAAAAACTGATCCTTCTGAAATATCGGATGATATCCTTGATGCCTGGGGCGATGTACAGGTGATCACCTATAAGTGGTTAGCTTCTATCGCATCTAAAGGGGAGGACTCTGCTCGTTGGCATTTCGGGGTAATTGCCCAACAGGTTCGTGACACGTTCATCAAGCATGGATTGGATGGTACTGCCTTTGGCCTGCTTTGTTACGACGAGTGGGAAGATGAATATGAACCTGAATTCACTGATGAGATTATCACTGTTAATATCGACGGTGTGGATACCGAAGTTACACGTCAAGTGGCAACCGGTAACACGTTGCTTGTTAGAGCTGCCGGTAATCGTTGGGGCATTCGTCCCGATCAGTGTTTTTGGTTAGAAGCCGCTTATCAGCGTCGTCGTGTAAGCCGTATAGAAGAACGCTTACTCGCACTTGAATCCAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
360847f0a6bfe7f8582775b5f810265940a548f67ecf591c6ef38506afe5ea3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6223
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigation of the effectiveness of bacteriophages isolated from environmental samples against clinical strains of Extraintestinal pathogenic Escherichia coli (ExPEC) producing extended-spectrum beta-lactamase (ESBL) Kulubecioglu,E., Karaynir,A., Bozok,T., Salih Dogan,H., Coral,G., Bozdogan,B. and Ocal,M.M. — — GenBank