Protein

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Genbank accession
XXJ63423.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,58
TF
Evidence RBPdetect2
Probability 0,67
Protein sequence
MSEFRRAFRASGLDASNQNVINVANPRTDELFDGINQGYFIDENTVQEYDSTRAHYKVDFIVEFNQRLYKNIIEVNAPEAFDPQKWKKMRNDPEWEDTDSSVGANVGDFLLLTASSAITVTLPASPLTGDTVTIKDGRGVISTYPCSIVAAGGKTIQHYGINGGVQSDTSISFNRPSSTIYLVYNGIAWTYQINQQPYHTYLDDSHASQQGAYLTTGGYFTNVGETVTFDGSVKKIAISLPLNPNVGDTIHLKDVAYLENQTSIQIGVRTVSTGQIVQDPFSGVRSSTISLDTIGAADITFIDDNGTGVWIITLANNPHLWNYVGESSSVTLKPRTRYAIEIADAVPSMTITLPEKPVDGDWIEISHNKTAHKTVTVQVHPNFGDNDPGHGVDEYKVFLDFETYRYQKYRHYVDFVPFFVESFDISDYDSGYSFVLYYDGTRKVWSFGNIATRIDVADELHRKRPGIVPLADPTEALAHGIEYAHSEDAAQPWADQSPLKDHVITVETLDARRAAEDQVGIARIATLDTDEALEESRSGTLVRYPDSAFRHDIIITPRSLNARTATETRRGVVEIATQTETRSTTNDVQVLTPKKFHAAQAEENLTGVAELVKASNNINANGTLGSTANMRSDRTVNGLVDTVYDINDHVRIVTPKMLNEYRATENQPGTLWVAKSSELRVNDSTVDDAIITPKKLAAWKASATIRGIARSATQTEANAITGSGESWTTVFITPETLHNRSATETRRGVAEIATQAEVDAGALDTHIVSPLKLQTWLAYDHFTSDGVLQGAGYGVSGISHTGDIWNGINLEIALATETQRGTLEVATQSEANAQLVPSDTKIITPAKLNARRATESLAGIAELATTGEIDTGTDDVTIVTPAKLLHWTRNSTNSRATESQWGTVHNATIAETFVGNDTVGSTQPYTSYLRNTYAVTPYGLHYALRNYLPLHAKADDSELLDGIDSTQFARSDESDVIDGVYTFTQNDLIVRGDSPRLTLIETDQSNKEWNVLVSLSGLSIREDGSATVRQLFAANGDTSFQNGSGIVRVNDGASATDASRLFVTGAVTETQSTANVDGTYATYSSPAAGTLRQKYLGINNVAKAAEKWVTARTVTLTGDLTGNFTIDGSGNVSTNVQVNDNSHNHSGENITSGTIANARLIKSSRTSQGIVQVTSDVRTADPVNASDPHQALSAGAGKTLSERIDLFTPDGGTGDSVKYRDYIQVGSVRMSTNNQGVLEFTFGHAI
Physico‐chemical
properties
protein length:1246 AA
molecular weight: 135430,70980 Da
isoelectric point:4,97537
aromaticity:0,07705
hydropathy:-0,35161

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXJ63423.1
1 1246
Domain Start End Length (AA) Confidence
N-terminal 1 253 253 0,8919
Central domain 254 768 516 0,0373
C-terminal 769 1246 477 0,1990
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-253
Central
254-768
C-terminal
769-1246

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage QD01
[NCBI] 		3440539 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ63423.1 [NCBI]
Genbank nucleotide accession
PV785814 [NCBI]
CDS location
range 243538 -> 247278
strand -
CDS
ATGTCGGAATTCCGCAGAGCATTTCGTGCGTCAGGTCTTGATGCAAGTAATCAAAACGTAATCAACGTAGCTAACCCAAGAACTGATGAACTGTTCGACGGTATTAACCAAGGTTACTTTATTGATGAAAACACCGTTCAAGAGTATGATTCAACACGAGCGCACTACAAAGTAGATTTCATCGTTGAATTTAACCAACGTCTCTACAAAAATATTATTGAAGTCAACGCGCCCGAAGCATTCGATCCACAAAAGTGGAAGAAGATGCGTAACGACCCAGAATGGGAAGATACAGACTCTTCAGTTGGTGCTAACGTCGGTGACTTCTTATTGTTGACTGCTAGTTCAGCAATCACAGTTACACTACCAGCATCGCCACTTACTGGCGACACAGTAACAATCAAAGACGGGCGTGGCGTTATTTCAACATACCCATGTTCTATTGTTGCGGCTGGCGGTAAAACTATTCAGCATTACGGTATCAATGGTGGCGTACAATCTGACACAAGTATTTCATTCAATCGCCCTTCAAGCACAATTTATCTTGTGTACAACGGGATTGCATGGACGTATCAGATCAACCAACAACCATACCATACATACCTAGATGACAGTCACGCAAGCCAACAAGGCGCGTATCTGACAACAGGTGGTTACTTCACTAACGTCGGTGAAACTGTTACGTTTGACGGCTCAGTGAAGAAAATTGCGATCTCGCTACCGCTTAACCCGAACGTGGGCGACACAATTCATCTTAAAGATGTTGCGTATCTTGAAAATCAAACGTCAATTCAAATTGGCGTGCGAACAGTATCAACTGGTCAAATTGTTCAAGACCCATTCTCAGGTGTTCGTAGTAGTACGATCAGCTTAGATACAATCGGTGCGGCTGACATCACATTCATTGATGACAACGGCACAGGCGTATGGATTATTACACTTGCGAACAACCCACACTTGTGGAACTACGTAGGTGAATCAAGCTCAGTAACGCTTAAACCACGTACTCGTTACGCGATTGAAATCGCAGATGCTGTACCGTCAATGACGATCACTCTACCAGAAAAACCAGTTGATGGTGACTGGATTGAGATTTCGCATAACAAAACAGCACATAAAACAGTAACAGTTCAAGTACACCCAAACTTCGGTGATAACGACCCGGGTCATGGCGTCGATGAATACAAAGTATTCTTAGACTTTGAAACGTATCGCTACCAGAAATATCGTCATTACGTCGATTTCGTACCATTCTTCGTTGAATCGTTCGATATTAGCGACTATGACAGCGGTTACTCGTTTGTTCTGTACTACGACGGCACACGTAAAGTATGGTCGTTCGGTAACATTGCAACTCGTATCGACGTTGCAGATGAACTACATCGTAAACGCCCAGGTATTGTTCCGTTAGCGGACCCTACTGAAGCACTTGCACACGGCATTGAGTACGCACACTCAGAAGACGCAGCACAGCCATGGGCTGATCAAAGTCCTCTGAAAGATCACGTAATCACGGTTGAAACTCTAGATGCACGTCGTGCAGCAGAAGATCAAGTCGGTATTGCGCGTATTGCTACACTCGATACTGATGAAGCACTTGAAGAATCACGTTCAGGTACGCTTGTTCGTTACCCAGATTCAGCATTCAGACATGATATTATTATCACGCCTCGAAGCTTGAACGCAAGAACTGCTACAGAGACACGTCGTGGTGTTGTTGAAATCGCAACACAGACTGAAACTCGAAGCACAACTAACGATGTACAAGTACTGACACCGAAGAAGTTTCATGCTGCTCAAGCGGAAGAGAATTTAACAGGTGTAGCAGAGCTTGTCAAGGCTTCTAACAACATAAATGCAAACGGAACGCTAGGTTCTACTGCAAATATGCGTTCTGACAGAACAGTTAACGGTCTAGTTGATACAGTATACGACATCAATGATCATGTTCGTATCGTAACACCGAAGATGCTTAATGAATATCGCGCTACGGAGAACCAACCGGGTACATTGTGGGTTGCTAAATCAAGTGAACTTCGCGTTAACGATTCTACAGTAGATGACGCAATCATCACGCCTAAGAAATTAGCAGCGTGGAAAGCAAGTGCAACAATTCGCGGTATTGCTCGTTCAGCGACACAAACTGAAGCTAATGCAATTACTGGCTCAGGTGAATCATGGACTACTGTGTTCATCACACCAGAAACATTGCATAACCGTTCAGCTACTGAAACACGTCGCGGTGTTGCAGAGATTGCTACACAAGCTGAAGTTGATGCTGGTGCTCTTGATACGCATATCGTTAGCCCACTGAAACTACAAACGTGGCTTGCTTACGATCACTTTACAAGTGACGGTGTGTTGCAAGGTGCAGGTTACGGCGTTTCTGGTATCTCTCATACAGGCGATATTTGGAATGGCATCAATCTTGAGATTGCACTAGCGACTGAGACTCAACGTGGTACGCTTGAAGTTGCAACGCAATCTGAAGCAAACGCACAGCTAGTACCGTCAGATACGAAGATCATCACGCCTGCGAAACTGAATGCACGTCGTGCAACAGAATCACTAGCGGGTATCGCTGAACTTGCAACAACTGGCGAGATTGATACAGGTACAGATGATGTAACTATTGTTACGCCTGCTAAATTGCTGCACTGGACTCGTAACAGTACAAACTCACGTGCGACTGAATCTCAATGGGGTACAGTTCATAACGCGACTATTGCAGAAACGTTCGTTGGTAACGACACAGTTGGTTCAACACAGCCATATACGTCTTACTTGCGTAACACATATGCAGTAACCCCGTACGGTTTGCATTACGCATTGCGTAACTACTTACCATTACATGCAAAAGCTGATGATTCAGAATTGCTAGATGGTATCGACAGCACGCAGTTTGCACGTAGTGACGAATCAGATGTGATTGACGGCGTTTACACATTCACACAGAATGATTTGATTGTTCGTGGGGACTCGCCGCGTTTAACACTGATTGAAACAGATCAATCTAATAAAGAATGGAATGTTCTTGTAAGTCTTTCGGGATTGAGCATTCGAGAAGACGGATCAGCAACTGTTCGCCAATTGTTTGCTGCGAACGGTGATACTTCGTTCCAAAACGGTTCGGGTATTGTTCGAGTGAATGACGGTGCTTCGGCAACTGATGCTTCTCGACTATTCGTTACTGGTGCGGTTACTGAGACTCAAAGCACTGCAAACGTCGATGGTACATACGCGACTTACAGCAGCCCAGCAGCAGGAACACTACGTCAGAAGTACTTGGGTATTAATAACGTAGCTAAAGCGGCTGAGAAGTGGGTTACAGCGCGTACAGTGACACTAACTGGCGACTTGACTGGTAACTTCACAATTGACGGAAGCGGAAACGTTTCAACAAACGTGCAAGTTAACGACAATAGCCACAATCACTCTGGTGAGAACATCACTAGCGGTACAATTGCAAACGCTCGACTAATCAAGTCAAGTCGTACAAGTCAAGGTATCGTTCAAGTAACAAGTGACGTTCGTACAGCCGATCCAGTGAATGCTTCAGACCCACACCAAGCTCTATCGGCAGGTGCAGGTAAGACGCTTTCTGAGCGTATCGACTTGTTCACACCAGACGGCGGTACAGGTGACAGTGTTAAATACAGAGACTATATTCAAGTTGGCTCTGTAAGAATGTCAACAAACAATCAAGGCGTGCTGGAGTTCACTTTCGGTCACGCGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
96c12a30043c27f1dd88309c5d0d4151a09f3b06d1522c3005b8dceb67dbaa0d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6701
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage QD01 Zhu,L. and Zhu,D. 2015-12 — GenBank