Protein

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Genbank accession
GENB_60a50d350823 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIPFPLMGGFSSAPPEPIPAGVELFNGAYYRDPDGNTWSWDRYTEKWNPNNNPVEEDGRPLYMRISNANVGTDGSFRYWNKSTNAWADVPQTSNTLGPLPLTVTDSGVNIANSIIGYWQIQGSLNSYNPGIAGGVLVGTPVIGRPDLMDMYVMGYRADFFSTSLPNPGFWNAALVMTNVKRGRVWNSGKNVVVENSAGEMWAWGMNFYNQYGPWRSGVTSSSQPGQKINYFTKIPDFPVTSDKVKDIFPGVSMVIVADTDGKFWSKGINIGQFNDTDSTIRTTWTEIPASRFPGFKKFYLSYNGGAGAANTLSLTNCVWYLTDTGFRHFGNNYGIMDGTVPVGASGDLPETKVHTSPVGLPATDKEPLLFNIVGTGASSSYPPVAIWYEDPEEIYVAHPTGGLVYNEVENNIPLRAFSRSSAPVGKHRNPIMDFNKEVTLITGFDGKFYASGTSTVGNGMSSRTSPATFTDQKMDGSLVTQIELSDSVGGKTQFLMNNNRTFMVADLGGGSNYFGNGTFWKQTVTVNWASYPNVYPVLFKNCGTILFGAAYTGNARWGFQVPNYNNVGTSAQTGSYGVWAIRALGEGHVMIAKDQGTILVGGQNVNGMFGATTQWSQPYSASNPNTNPRDYFTGTTTVSCGTALAYMNGNHFIFGKNYWDTANGQPVIPFATNSTVRWSSKPGFPDLPNFMQWFPALMGYTDDEGTLQQPFFMYRGTDGLFYAAGSNTTGALGTGSFPASRTEERWTFEPIQGSEVFAGNKNVKVYYGHGNTSCLLFCCEGKVYGIGLPNSMKWNDTGTISDPFFPGFNKRLNKITYLMDLPDVIWTRPVVAP
Physico‐chemical
properties
protein length:833 AA
molecular weight: 91109,90460 Da
isoelectric point:5,78237
aromaticity:0,13565
hydropathy:-0,30336

Domains

Domains [InterPro]
DC_1778
STR
140–355
DC_1778 DC_1778
IPR009091
STR
172–356
IPR009091 IPR009091
IPR009091
STR
191–309
IPR009091
GENB_60a50d350823
1 833
Architecture
STR
STR
STR 140-356 | STR 696-825 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_60a50d350823
1 833
Domain Start End Length (AA) Confidence
N-terminal 1 24 24 0,9507
Central domain 25 245 222 0,7300
C-terminal 246 833 587 0,3328
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-24
Central
25-245
C-terminal
246-833

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage POP18
[NCBI] 		2822859 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
MT552977.1_CDS_[complement(8821..11322)] [NCBI]
Genbank nucleotide accession
MT552977.1 [NCBI]
CDS location
range 8821 -> 11322
strand -
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
84d3fd6a9aa7ba020719a994b2156ff2d2a778f8827cb0a304675918c1386547

                    

                    
                      ColabFold
                    
                  

                  

                  

                    

                      Source
                      ColabFold
                    

                    

                      Method
                      ColabFold
                    

                    

                      Resolution
                      0,2963
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50