Protein

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UniProt accession

A0A6J5L9S5 [UniProt]

Protein name

Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MKRKLLYALLFSSIVIVTGCGGGGGGGTSPGGSPYPSGNPYLRTEVPYSAPVLAAVVAPFAAITNRSPVYETYTANIDNSGGDNLIIAGRDTQPSTPSTWVNSKISMLGWSNGQLVDKTAQWFTGGSNIILGTDPTLQFADFFHSGRTDMFVAPSTDMNLYGPAYLYQNTGSTFNRITIPLNNVWGHGATIADLDNDGYTDFAITDYGRNFTVGINNRVDNFRTYVQAPVAGNYLDSSSSVAVGDFLQNGTKQLVFTDTQCSYGPCTSAATKMFSYTLNNADLTIQLNYLSTLPTPRFELPKWASYNFGISHNVLAVTYDFVGNGIPSLIIFSAPSSNNLPNAKFSEIQFLKNDGRGNFTDVTDTTLVGYNTNTYTTYNPKFVDLNSDGLTDILVSGFDYSGANNSTQFLLRSRDGKYVAAYQNIMTDFLTQVNSIQGTANANNTVNVVRGAGGKLFLVSTASYLSNGNRQLGVYLSDLGAGNVTTAQTAVNLIKQAWPYMTDVQANLTLAKTSPTYMTDAGSAMLLDPDAWLKPIGSLSLSNPSRIGSMMPITGYISGIQLDNTNAVAMDSMGRGFNVNLRSMNSNGLNAFGYNTEHIDQYELTSHAEYLINGNTVTLNNMRIGAEGRNAGNTWSGKDEGPGMLTKPTQYTVGIPEIYRNGNISYGAQYTSLNTHPFLAFGGAWGNVTNSGVLDNVVSYRKNGFSASASLMYVTTNIQPGLVTKVSDITGGWAETGYRYTEDKLGDIGLYMGVKPVVFSGQVETKMPTSIDNNGNTVYTKQNYGINNAVTPYVRALYTNMIDKKTMYRLSGTALSNGQYRVMNEMRFFFD

Physico‐chemical properties

protein length:	831 AA
molecular weight:	89911,37280 Da
isoelectric point:	5,65312
aromaticity:	0,11071
hydropathy:	-0,21276

Domains

Domains [InterPro]

PS51257
STR
1–20

PS51257 IPR028994

IPR028994
STR
136–475

IPR028994

IPR013517
STR
141–203

IPR013517 IPR028994

A0A6J5L9S5

1 831

Architecture

STR

STR 1-20 | STR 136-475 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
PS51257	STR	DC_0072	1	20	InterPro cluster	Prokaryotic membrane lipoprotein lipid attachment site profile.	N-terminal	Low	Positional only	130 proteins / 133 hits
IPR028994	STR	IPR028994	136	465	Merged direct domain	Integrin alpha, N-terminal	Central	Low	Positional only	7 proteins / 7 hits
IPR028994	STR	IPR028994	136	475	Merged direct domain	Integrin alpha, N-terminal	Central	Low	Positional only	7 proteins / 7 hits
IPR013517	STR	DC_0203	141	203	InterPro cluster	FG-GAP repeat	Central	Low	Positional only	2 proteins / 2 hits
IPR028994	STR	IPR028994	211	454	Merged direct domain	Integrin alpha, N-terminal	Central	Low	Positional only	7 proteins / 7 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

A0A6J5L9S5

1 831

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	55	55	0,7507
Central domain	56	820	766	0,8655
C-terminal	821	831	10	0,1021

Note: Constraints were applied during segmentation.
Fixed 4 C-terminal predictions appearing before Central domain|Sequence started with non-N-terminal domain|C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-55

Central
56-820

C-terminal
821-831

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	uncultured Caudovirales phage [NCBI]	2100421	Uroviricota > Caudoviricetes > Peduoviridae > Maltschvirus maltsch >
Host	No host information

Coding sequence (CDS)

No CDS data available.

Genome Context

Tertiary structure

PDB ID

93b80203d2e77890477dcd93010404d33f35d6d65544f7023cce0f3748985a7b

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2835

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence