Protein

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Genbank accession
CAL9966423.1 [GenBank]
Protein name
internal virion protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAAIKLFTFKGEVPSYAPHLLPNEAATVAKDCHFDGGKLNPIMESLDTGDTVPGDTGTLFRYEDQYWFSWVGDVDAIKSPIARDSWRRVYWTDGDYPKVTYNTIFNGSGRLPLASYRLGIPSPANSPGITYFTPAVDPEEEVTIFYVLTYSSAVGEEGMPGPVSIEINCFPVGIKQDQQGGANEIGKVTLSLQPPGTNNSNINTINIYRTTATAGASEFLKVASVPIATPSYTDSIPDYSLTNILETENFSMPPEEMKGLCVMANGICAGFVENEILFSEAYLPYAWPEDYRLSIEEDVVAIEPIGTSLVVGTTGDPYLFSGVSPGNIASQRLEISQACSSKLSMCNIGMAVVYACPDGLVGIAPDGVMMMTNGIISPRQWRELVDPSTIKAFRYEGKYVATHSKGAFIFDPITKDFRQLSASFSVGYTDARDESLYYIVAGKVFKFQGGQNSLELTWRSKEFVNISKSFSCVRIDADDINLVSFKYFVDGNEVLSRDKGQVKTTFTLPSVRGDSCQFELSSNSNIQTIRVATSKQELKE
Physico‐chemical
properties
protein length:540 AA
molecular weight: 59162,05550 Da
isoelectric point:4,69731
aromaticity:0,10741
hydropathy:-0,14019

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAL9966423.1
1 540
Domain Start End Length (AA) Confidence
N-terminal 1 423 423 0,9138
Central domain 424 529 107 0,0128
C-terminal 530 540 10 0,9909
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-423
Central
424-529
C-terminal
530-540

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage D70
[NCBI] 		3105314 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAL9966423.1 [NCBI]
Genbank nucleotide accession
OZ195828 [NCBI]
CDS location
range 12700 -> 14322
strand +
CDS
ATGGCTGCAATTAAGTTATTCACATTTAAAGGAGAGGTGCCGTCATACGCACCTCATTTGCTGCCTAATGAAGCGGCTACAGTGGCGAAGGATTGCCACTTTGATGGCGGCAAGCTTAACCCAATCATGGAAAGTCTAGATACTGGCGACACCGTTCCGGGTGACACTGGCACATTATTCCGTTATGAAGATCAGTATTGGTTCTCTTGGGTTGGTGATGTCGACGCAATTAAAAGCCCTATCGCTCGAGACTCTTGGCGTCGTGTGTATTGGACTGACGGCGATTATCCAAAAGTAACTTATAACACAATATTTAATGGCTCTGGTAGGCTGCCTTTAGCAAGCTATAGACTTGGAATCCCCTCTCCTGCAAACTCACCAGGTATAACCTATTTCACTCCTGCGGTAGATCCGGAGGAAGAGGTAACTATTTTTTATGTACTTACCTATAGTTCCGCAGTAGGTGAAGAGGGAATGCCGGGGCCGGTATCAATAGAGATTAATTGTTTTCCAGTTGGCATAAAGCAAGATCAACAAGGCGGGGCTAATGAGATTGGAAAGGTTACTTTATCTCTTCAACCTCCGGGTACAAACAATAGCAATATAAACACTATCAACATATACAGAACAACGGCGACCGCTGGCGCGTCTGAGTTTTTAAAGGTTGCTTCTGTTCCTATTGCTACGCCTTCTTATACCGATTCAATACCAGATTACTCGCTAACCAATATTCTAGAGACGGAAAATTTCTCAATGCCACCTGAAGAAATGAAAGGTCTTTGCGTTATGGCTAACGGAATATGTGCCGGGTTCGTAGAGAATGAGATTTTGTTTTCTGAGGCTTATCTTCCTTACGCCTGGCCAGAAGATTACCGACTATCAATAGAAGAGGATGTGGTAGCGATCGAGCCTATTGGCACTAGCTTGGTTGTTGGGACCACTGGCGATCCTTATCTATTTAGCGGTGTAAGCCCTGGCAACATTGCCAGCCAAAGGCTAGAAATATCTCAAGCGTGTTCTTCTAAGTTATCGATGTGCAATATAGGCATGGCGGTTGTGTACGCTTGCCCTGACGGTTTAGTGGGTATTGCACCCGACGGCGTAATGATGATGACTAACGGTATTATCAGCCCTAGACAATGGCGTGAGCTTGTAGATCCTTCCACTATCAAAGCATTCCGCTATGAAGGTAAGTACGTTGCCACACACAGTAAGGGCGCGTTTATATTCGATCCTATTACCAAAGACTTTAGACAGCTATCTGCAAGCTTTAGTGTTGGTTACACGGACGCACGCGACGAGAGTTTATATTATATCGTTGCTGGCAAAGTTTTTAAGTTTCAAGGCGGTCAAAATAGCCTAGAGCTTACTTGGCGATCGAAAGAGTTCGTGAATATTTCAAAGTCGTTTTCATGCGTTCGCATTGATGCCGACGATATTAACCTAGTGTCTTTCAAATATTTCGTTGATGGCAATGAAGTATTAAGCAGAGATAAAGGGCAAGTTAAAACAACCTTCACGCTTCCGTCAGTTCGTGGTGATAGCTGTCAATTCGAGTTATCATCTAATAGTAATATTCAGACTATTAGAGTTGCTACGTCAAAGCAGGAGCTTAAAGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb6ced4564a41f591457774d772012784e0bc6fe853aa9681ec79aeb7e16b0c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9393
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50