Protein

View in Explore
Genbank accession
YP_010747921.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MALVIHYTRNEDGTFDAKRYHDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGRGYLDIRPEDITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEVTYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVHKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIANAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAAHRRHQKNILKKISVSFTATEEGIFALPNRAISVVKGSRMATYDGYITAVNGLTVELSQPVKFTSGDDHYLVLKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVGPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93894,90060 Da
isoelectric point:5,34857
aromaticity:0,09742
hydropathy:-0,36596

Domains

Domains [InterPro]
DC_0118
STR
1–685
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
YP_010747921.1
1 852
Architecture
STR
RBD
STR 1-685 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010747921.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9843
Central domain 233 431 200 0,6241
C-terminal 432 852 420 0,1332
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-431
C-terminal
432-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage LPSE1
[NCBI] 		1929963 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus LPSE1
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010747921.1 [NCBI]
Genbank nucleotide accession
NC_073204 [NCBI]
CDS location
range 34493 -> 37051
strand +
CDS
TTGGCGCTAGTAATCCACTACACCCGCAACGAAGACGGCACATTTGACGCTAAACGTTATCACGATAATCCGATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTTCCGGTACGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCAGCTGGTGGTGGCGCCATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTATTATCGCCGTCCGTGAAAGGTGCGTCCTCTAACCTGGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGCAACAACAAGGCGCGCCCGTACGAGCGCAGTTACGACATCTGCGGGACGGTGCAAACCATCCCCAATAACCTTATGACTACTTACAAGGTGTTTAACGCCGCCGGTAAAATTGTAGAGTACGGTTATTACGACGCCGGTCGCGGCTATCTTGACATACGCCCTGAAGATATCACTGACGGGGACACCCGTGTATCGGATATAACAGGCACGTCGGTTGCCGTGTACGCACCATATACATCGCCCAATAACACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTGTTGGTTCCTAACGACACGTTTTCGTTGGTGTCAGCATGGACAAATACGGACGTCGACCTATCTGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCGTTACTTTTATCGTGCCTGGCGGCCTTATTGGGCGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGACGGAGAGGCGTCGCTGCAACCGGATAATACATACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATCGCTGCTGCCAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCATCCGTTACCGCTGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCGATATACACGGCGCAAGGAACCGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCCGACCTGCCGGTTGTGTCGCGGGTGCGGGTGCGCGCCAGAAGGGTAACGGACCTCGACTTTAATTTCGAGGGGTCCGTGGTTGATGAAGTAACGTACGTTAACTTGTACGGGCAAACACGCGATAACACTCCACACTACGGCAACAGGACTACCGTACACTCAATGCGCAAGCAGACACCACGCGCCGCGGAAGTTAAGCAACCACAGTTACGTATGATTGCCACCGAAATGGTACACAAATACCTTGGTAACGGTGTTTTCGAAGATACGATGACCCCCAATACCCAGGCCGTGCAATCTCTTATCCGCCTGGCGCGTGATCCGGATGTGGGGGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCTGTGCAGAACGAGGTCGAAGCGTATTTCGGTGACAAACAGGCGGGGGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATAGTTAGTACTATAGCCAACGCTATCTTCTGTACCCCATACAGGCGTGGGGCGGACATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCTGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCTAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCAGCGCACCGCCGCCACCAGAAGAATATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATCTTTGCTTTGCCAAATCGTGCCATTAGTGTCGTTAAGGGCTCACGTATGGCTACATACGATGGCTACATAACCGCGGTTAACGGTCTTACCGTAGAGCTATCCCAGCCGGTTAAGTTCACATCCGGAGATGACCATTATTTGGTTCTGAAGTTACGTGACGGCGGCGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACCGGCAGGTAATTATGACATCAGTACCGCAAGAAGCCATTTACACAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGGCCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTCGACAACGTACCGCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dd2864d8794edd6cd7ee2449421808118babbe7fcffd6d3f3cda7e569c27f767
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8336
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Bacteriophage LPSE1, Isolated in China Huang,C., Dong,X., Shi,J., Li,Z., Chen,D., Li,J. and Wang,X. 2015-02-26 — GenBank