Protein

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Genbank accession
YP_010105802.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,63
Protein sequence
MALFMGRKPSDNRPLLHVTSGSESISQLHGAPIASTLFHSDIPYLAISKVIEVTQFKHVEARQSGTRYYHYYEPVIPQEVWNYMNQGYLMCGSNVSYHPNYVEHRPIGVYSSDWSPTSADIFIGNFQGSMGGGHPYGGISSGWAPIDMHDMANADETVDQAVRIQSDSFITDYPTSKSYYRNNWSISGLAPKTKNYKRVIQSPNVSASASRATSASFTKENKINRALFANGTTSSRMRIIRPTASAPTTLTYSSTNPSDSNFKLIIYIFNVKYNSSNKLEHVKPDVSDGIRISREDMVVGDLAMKNGMFITDPAPNEDLLDSTISSHKYKVKYPFFDRLVKGLTLAQLADYPFPYCRFFKSSNGNWSVNEGTGWYNIDTILLVHSPSALLGTGVSLDFSADEIKYKGSKGEYLIASKARKYTPFVLGGDSAITAVFPAETNTFAQLKQGTSFKKEVIDFGPSDWRRVLNPDQCGNYYKTVVKQRIKLPPGSTNKSYLSVHVSSPYLKGEASSTIAGKTSKMNVGIDGYSGWSNLQYMIFSKDHPDKEAVVSDIGFSTMRDVSKTSSDRSWWYFSSTGNKMQAVRIQYKIRVNWVRNELELVGWYKLTNAALQCAEYSGKTTYYNKLGERDVTYKTPEVRLGFYILGTA
Physico‐chemical
properties
protein length:648 AA
molecular weight: 72443,76590 Da
isoelectric point:9,16555
aromaticity:0,12037
hydropathy:-0,42253

Domains

Domains [InterPro]
IPR059609
RBD
1–634
IPR059609
YP_010105802.1
1 648
Architecture
RBD
RBD 1-634 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010105802.1
1 648
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,4889
Central domain 82 280 200 0,3829
C-terminal 281 648 367 0,9155
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-81
Central
82-280
C-terminal
281-648

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Chester
[NCBI] 		2712961 Uroviricota > Caudoviricetes > Demerecviridae > Thalassavirus > Thalassavirus chester
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010105802.1 [NCBI]
Genbank nucleotide accession
NC_055830 [NCBI]
CDS location
range 8123 -> 10069
strand -
CDS
ATGGCACTTTTTATGGGCAGAAAGCCCTCAGATAATAGACCACTATTACATGTAACTAGTGGCAGTGAGTCTATTTCTCAATTACATGGGGCACCTATAGCCTCAACGCTATTTCACTCAGATATACCATACTTAGCAATATCAAAGGTTATAGAGGTAACTCAATTTAAGCACGTAGAAGCTAGACAATCGGGTACTAGATATTACCACTACTATGAACCGGTTATACCACAAGAGGTATGGAACTACATGAACCAAGGATACCTAATGTGTGGCTCAAACGTATCATACCACCCTAACTACGTAGAGCATAGACCTATAGGTGTATATTCTAGTGACTGGTCTCCTACTTCGGCAGATATATTTATAGGTAATTTTCAAGGTTCTATGGGAGGAGGACACCCTTACGGTGGTATTTCCAGTGGTTGGGCACCTATAGATATGCATGATATGGCTAATGCTGACGAAACGGTGGATCAAGCAGTGCGTATCCAAAGTGATTCATTTATAACAGACTACCCTACTAGTAAAAGTTACTATAGAAATAACTGGAGCATATCTGGTTTAGCACCGAAAACTAAGAACTATAAAAGAGTAATTCAGTCTCCAAATGTGTCTGCATCAGCTAGTAGAGCTACATCAGCTAGTTTCACTAAGGAAAACAAAATAAATAGAGCACTGTTCGCTAATGGTACTACATCATCTAGGATGCGTATTATTAGACCTACAGCATCAGCTCCAACTACTCTAACTTACTCATCTACTAACCCATCAGATAGTAACTTCAAATTAATTATTTATATATTTAATGTAAAATATAATTCTAGCAACAAACTAGAACATGTGAAGCCTGATGTAAGTGATGGTATACGCATATCTCGTGAAGATATGGTAGTAGGGGATTTAGCTATGAAAAACGGAATGTTCATAACGGATCCTGCTCCAAATGAAGATTTACTAGATAGTACAATTTCTAGTCATAAATATAAAGTCAAGTATCCGTTTTTTGACAGGCTAGTAAAGGGTTTGACGTTGGCACAACTAGCAGACTACCCGTTCCCTTATTGTAGATTTTTTAAGAGTAGCAATGGTAACTGGAGTGTTAATGAGGGTACAGGCTGGTATAACATTGATACAATACTACTAGTGCACTCCCCGTCAGCGCTTCTTGGGACTGGCGTATCACTAGACTTCTCGGCGGATGAGATTAAATATAAAGGAAGTAAAGGTGAATATTTAATAGCATCAAAGGCTAGAAAGTATACACCTTTTGTACTTGGCGGTGATTCGGCTATTACGGCGGTATTTCCAGCTGAAACCAATACCTTCGCACAATTAAAACAAGGTACTTCATTCAAGAAAGAGGTAATAGACTTCGGGCCATCAGATTGGAGACGTGTTCTGAACCCTGACCAATGTGGGAATTACTATAAAACAGTGGTGAAACAAAGAATAAAGCTACCACCAGGCAGTACTAATAAGAGCTATTTATCAGTGCATGTTAGCTCACCATACTTGAAGGGGGAGGCGAGTAGCACGATTGCTGGTAAAACGTCTAAAATGAATGTAGGTATTGATGGATATTCCGGCTGGTCAAACTTACAATACATGATATTTAGTAAGGATCATCCTGATAAGGAAGCGGTTGTATCTGATATAGGATTCAGCACAATGCGAGATGTATCAAAAACAAGCTCGGATAGGTCTTGGTGGTATTTCTCTAGTACTGGTAATAAGATGCAGGCTGTAAGAATACAATATAAGATACGGGTAAATTGGGTGCGCAATGAGCTAGAATTGGTAGGGTGGTATAAACTTACTAATGCTGCCCTACAGTGTGCTGAGTATTCTGGCAAGACAACATATTATAATAAACTTGGCGAGAGGGACGTAACGTACAAGACACCTGAGGTACGGTTAGGTTTCTATATATTGGGTACGGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b94a588121d881cde016ab649e7cbb24c9d0b61aa7da4e2233228f4ef531737a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2728
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50