Protein

View in Explore
Genbank accession
AFF27982.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MDVIFDQFRDHNNNDYNWGGGTPGPQGPIGPQGPRGEQGPMGPAGPQGPIGSDGKQGPKGDPGPAGGPQGPKGDTGPQGSKGDKGDTGPQGPKGDKGDTGPQGPKGDKGDTGPQGERGKQIFKSSAEYYEANSSDHWWSDLNPVVSVDNPPKVGDTIITSSGDVFQVNALNAGDGGGGGSFGVGGVLGNIKGPQGEKGDKGDTGAEGDPNKRGQILDGYDLNGYTDIYKYTINGAKNLVNYPSGASTYASLEVEKINPNTTIQRLMDTNNRVFIRTLGGDPAVWSAWRDISETDNSWKLVATGHIESEFTNPTNKGTVKYWQNGNLVLCDLSSSAVNITKEIPVNSAVAQLSIIVDSGTIPREMPGNLWYAISVETNQFDAGVFSQRAGNDANGNPAIRVRFIAHAGSVGKYLRFGMPTYLTSTSLATSPVVETLYPTQTQAQIESAFYGGAKA
Physico‐chemical
properties
protein length:454 AA
molecular weight: 47495,46090 Da
isoelectric point:4,96480
aromaticity:0,07709
hydropathy:-0,66872

Domains

Domains [InterPro]
IPR050149
Unmapped
21–209
IPR050149
IPR008160
STR
21–66
IPR008160 DC_0620
DC_1341
STR
25–80
DC_1341 G3DSA:1.20.5.320
IPR008160
STR
67–119
IPR008160
AFF27982.1
1 454
Architecture
STR
STR 21-448 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Weissella phage phiYS61
[NCBI] 		1161906 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Weissella cibaria
[NCBI] 		137591 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFF27982.1 [NCBI]
Genbank nucleotide accession
JQ341413.1 [NCBI]
CDS location
range 20396 -> 21760
strand +
CDS
ATGGACGTTATATTCGACCAATTTAGAGATCACAACAATAATGATTATAACTGGGGCGGTGGGACCCCAGGGCCACAAGGACCAATAGGACCACAAGGACCCCGCGGTGAACAAGGACCAATGGGCCCAGCAGGTCCACAAGGGCCAATCGGGTCAGACGGTAAGCAAGGGCCTAAGGGAGACCCAGGACCCGCTGGGGGACCACAAGGCCCGAAGGGTGACACTGGTCCACAAGGTTCCAAGGGTGATAAAGGTGATACTGGTCCTCAAGGTCCCAAGGGTGATAAAGGTGATACTGGTCCTCAAGGTCCCAAGGGTGATAAAGGTGATACTGGTCCTCAAGGTGAACGTGGCAAGCAGATTTTTAAAAGTAGTGCCGAGTATTATGAAGCAAATAGTTCAGATCATTGGTGGTCTGATTTAAATCCAGTGGTGTCCGTTGATAATCCTCCCAAAGTTGGTGATACTATTATCACTTCATCCGGTGACGTTTTTCAGGTTAATGCTCTGAACGCTGGTGACGGTGGAGGTGGTGGCAGCTTTGGAGTTGGAGGCGTACTTGGAAACATCAAAGGACCGCAAGGAGAAAAGGGTGACAAAGGTGATACAGGCGCTGAGGGGGATCCCAATAAACGAGGGCAAATCCTAGACGGGTATGACCTAAATGGCTACACAGACATTTATAAGTACACTATCAATGGCGCTAAAAACCTTGTGAACTACCCTAGTGGCGCTAGTACCTACGCCTCATTAGAAGTTGAGAAGATCAACCCAAATACAACTATCCAACGTCTAATGGACACTAATAACCGCGTTTTTATTAGAACGCTGGGTGGTGATCCGGCTGTTTGGTCAGCTTGGCGGGATATTTCCGAAACAGATAACTCATGGAAGCTAGTTGCAACCGGGCACATTGAGTCGGAATTTACAAATCCAACCAATAAGGGGACTGTAAAATACTGGCAGAATGGTAACTTGGTTCTGTGTGACCTCTCAAGTAGTGCAGTTAATATAACAAAAGAAATTCCCGTAAATTCAGCGGTAGCACAACTTTCAATTATCGTTGACTCTGGAACTATTCCGCGTGAAATGCCTGGTAACTTGTGGTATGCTATTTCCGTGGAAACTAACCAATTTGACGCGGGTGTATTTTCACAACGCGCTGGTAACGACGCAAACGGGAACCCAGCTATTCGTGTAAGGTTCATTGCGCATGCCGGAAGCGTGGGAAAATACTTACGTTTTGGTATGCCGACATACCTTACAAGCACAAGCCTTGCAACGTCGCCTGTGGTCGAGACGTTATACCCAACTCAAACCCAAGCACAAATTGAAAGTGCTTTTTATGGGGGCGCAAAGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
589e3907d86aed9b38d3e22a71ba005127d7fa8728e93fc8ca2d8e548f69b4b9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6750
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Podoviridae Family Bacteriophage Infecting Weissella cibaria Isolated from Kimchi Kleppen,H.P., Holo,H., Jeon,S.R., Nes,I.F. and Yoon,S.S. 2012 22885743 GenBank