Protein

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Genbank accession
WMX18702.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRTNLSDWTVNVGQGFIHVTAPSGQQIDSFTTKDGYADQLINPVTHYAQSFSKLPPNAPNGYMVKIVGDASKSADQYYVRYDAERKVWTETLGWNTEDQVLWETMPHALVRAADGNFDFKWLEWSPKYCGDVDTNPWPSFVGSSINDVFFFRNRLGFLSGENIILSRTAKYFNFYPASIANLSDDDPIDVAVSTNRIAILKYAVPFSEELLIWSDEAQFVLTASGTLTSKSVELNLTTQFDVQDRARPFGIGRNVYFASPRSSFTSIHRYYAVQDVSSVKNAEDITSHVPNYIPNGVFSICGSGTENFCSVLSHGDPSKIFMYKFLYLNEELRQQSWSHWDFGENVQVLACQSINSDMYVILRNEFNTFLAKISFTKNAIDLRGEPYRAFMDMKIRYTIPSGTYNDDTYTTSIHIPTIYGANFGRGKITVLETDGKITVFEQPTAGWNSDPWLRLNGNLEGRMVYIGFNINFVYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYEDSGTFDIYVENQSSNWKYTMAGARLGSNTLRAGRLNLGTGQYRFPVVGNAKFNTVYILSDETTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:591 AA
molecular weight: 66855,96220 Da
isoelectric point:5,36147
aromaticity:0,13706
hydropathy:-0,31929

Domains

Domains [InterPro]
IPR058003
TTP
2–591
IPR058003
WMX18702.1
1 591
Architecture
TTP
TTP 2-591
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMX18702.1
1 591
Domain Start End Length (AA) Confidence
N-terminal 1 404 404 0,9363
Central domain 405 580 177 0,0910
C-terminal 581 591 10 0,9488
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-404
Central
405-580
C-terminal
581-591

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YpYeO9
[NCBI] 		3056114 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teseptimavirus
Host Yersinia pestis EV76-CN
[NCBI] 		665028 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pestis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMX18702.1 [NCBI]
Genbank nucleotide accession
OQ828305 [NCBI]
CDS location
range 23887 -> 25662
strand +
CDS
ATGCGAACTAACTTGTCTGATTGGACTGTAAATGTAGGGCAAGGGTTCATCCATGTGACCGCACCTAGTGGTCAACAGATTGACTCCTTCACGACTAAAGATGGCTACGCAGACCAGTTGATTAACCCTGTGACCCACTACGCTCAGTCGTTCTCTAAGCTGCCACCTAATGCTCCTAACGGCTACATGGTGAAAATCGTAGGGGACGCCTCTAAGTCTGCCGACCAGTATTACGTGCGGTATGACGCTGAGCGGAAAGTTTGGACTGAGACTTTAGGTTGGAACACTGAGGACCAAGTTCTATGGGAAACGATGCCACACGCTCTTGTGCGAGCCGCTGACGGCAATTTCGACTTCAAGTGGCTTGAGTGGTCTCCTAAGTATTGTGGTGACGTTGACACCAACCCTTGGCCTTCTTTTGTTGGTTCAAGTATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGATTCCTTAGTGGGGAGAACATCATATTGAGTCGTACAGCCAAATACTTCAACTTCTACCCTGCGTCCATTGCGAACCTTAGTGATGACGACCCTATAGACGTAGCTGTGAGTACCAACCGAATAGCAATCCTTAAGTACGCCGTTCCGTTCTCAGAAGAGTTACTCATCTGGTCCGATGAAGCACAATTCGTACTGACTGCCTCGGGTACTCTCACATCTAAGTCGGTTGAGTTGAACCTAACGACCCAGTTTGACGTACAGGACCGAGCGAGACCTTTTGGGATTGGGCGTAATGTCTACTTTGCTAGTCCGAGGTCCAGCTTCACGTCCATCCACCGGTACTACGCTGTGCAGGATGTCAGTTCCGTTAAGAATGCTGAGGACATTACATCACACGTTCCTAACTACATCCCTAATGGTGTGTTCAGTATTTGCGGAAGTGGTACGGAAAACTTCTGTTCGGTACTATCTCACGGGGACCCTAGTAAAATCTTCATGTACAAATTCCTGTACCTGAACGAAGAGTTAAGGCAACAGTCGTGGTCTCATTGGGACTTTGGGGAAAACGTGCAGGTTCTAGCTTGTCAGAGTATCAACTCAGATATGTATGTTATTCTTCGCAATGAGTTCAATACGTTCCTAGCTAAAATCTCTTTCACTAAGAACGCCATTGACTTACGAGGCGAACCTTACCGTGCCTTTATGGACATGAAGATTCGCTACACGATTCCTAGCGGAACATACAACGATGACACCTATACTACCTCTATCCATATTCCAACTATTTATGGTGCAAACTTCGGGAGGGGCAAAATCACCGTATTGGAGACTGATGGTAAGATAACCGTATTTGAGCAACCTACGGCTGGGTGGAATAGCGACCCTTGGCTGAGACTCAACGGTAACTTAGAGGGCCGCATGGTGTACATCGGGTTCAACATTAACTTCGTCTATGAGTTCTCTAAGTTCCTCATCAAGCAAACTGCCGACGATGGGTCTACCTCCACGGAAGACATTGGTCGCTTGCAGTTACGCCGAGCGTGGGTGAACTATGAGGATTCTGGAACGTTCGACATTTATGTTGAGAACCAATCGTCCAACTGGAAGTACACAATGGCTGGTGCTCGATTAGGCTCTAACACTCTAAGGGCAGGGCGGCTGAACTTAGGGACCGGACAATACCGATTCCCTGTGGTGGGCAACGCCAAGTTCAATACCGTATACATCTTGTCAGATGAGACTACCCCTCTGAACATCATTGGGTGTGGCTGGGAAGGTAACTACTTACGGAGAAGTTCCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3714f8283c6a43e988f2e5c049bdb4e938207e6fe464a11a74cb7d47436656f6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8519
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Enterobacteriaceae - specific Podoviridae bacteriophages show lytic activity to Yersinia pestis: characterization and application potential Suladze,T., Gorge,O., Kusradze,I., Valade,E., Jaiani,E., Darsavelidze,M., Elizbarashvili,M., Janelidze,N. and Tediashvili,M. 2023-06-30 — GenBank