Protein

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Genbank accession
YP_010076332.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGQVDGNVTINGLLTLKGDYTQTGGMQVTGDIYAGAGMSALVYRARNGSFYSRASNDTSNAHFWFENTDGRERGVLYAKPQLANEGTITLRVRQGSADGAGNIEFHFISSNGGIFQSPKVNATTSISTPNLTVNLINHDGKSFGTYDSQSLVNYVYGGTGETNAVNYLRKVRAKSGGTIFHELASAQTGQSDEISWWTGSTPSSKQTGIRNDGRMIIRNSLAIGTMTADFPSSDYGNGAALGYDTAYIALGDNATGMSWKKTGVYDLVGSGLSVASITPDSFRSTRKGIFGRSEDQGTTWIMPGTNAAFLSVQTQADVNNAGDGQTHIGYNSGGKMSHYFRGKGQMNINTQEGMEINPGVLKLVTGANNVRFYADGGITSVKRLSIYNGVYLAANNSTAGLTFSATTTIDGTKQILWEGGTRAGQNKSYVTVKAWGNAFNASGDHSRETVFEVSDGQGYYFYSQRVAPSGSETTGPVVTQFNGQVNARGSIITDGSFKVNGLSTLVGNVTMSNGLFVQGGSSITGQVKIGGTADALRIWNAEYGAIFRRSEDKFYIIPTPQNAGESGGISNLRPFYITLSNGKVSMDHDVDIGGGRFKVEVAGTTANQRITVNMASDAIRINAPTQESSNFIQGRKADVPKWYLGIGDGGNVVRMHSYTYSHGIALNSDSVDITKPFKVGNAQLGTDGNITGGSGNFANLNSTIESLKTDIVSSYPIGAPIPWPTDTPPDGYAIMEGQTFDKSAYPKLAMAYPSGVIPDMRGQTIKGKPSGRAVLSAEADGVKAHSHSASASSTDLGTKTTSSFDYGTKTSSSFDYGTKTSNTTGNHNHTVSGNTSSSGAHQHNEGTYFSSYGYFMNGYNTRQSSGAAIETSNRQGIAFYGKTSSAGAHTHSWSGTTSTTGNHAHTVGIGAHTHTVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA
Physico‐chemical
properties
protein length:1012 AA
molecular weight: 106913,61360 Da
isoelectric point:8,89291
aromaticity:0,08794
hydropathy:-0,37787

Domains

Domains [InterPro]
DC_0538
STR
1–1010
DC_0538
G3DSA:6.20.80.10
STR
670–729
G3DSA:6.20.80.10 IPR051934
IPR048388
ATT
672–746
IPR048388 SSF88874 SSF88874
IPR037053
ATT
767–820
IPR037053
IPR011083
ATT
772–819
IPR011083
YP_010076332.1
1 1012
Architecture
STR
ATT
STR
ATT
STR
STR 1-671 | ATT 672-746 | STR 747-766 | ATT 767-820 | STR 821-1011 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010076332.1
1 1012
Domain Start End Length (AA) Confidence
N-terminal 1 825 825 0,0474
Central domain 826 1001 177 0,1049
C-terminal 1002 1012 10 0,9967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-825
Central
826-1001
C-terminal
1002-1012

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage JK45
[NCBI] 		2591063 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010076332.1 [NCBI]
Genbank nucleotide accession
NC_054940 [NCBI]
CDS location
range 158769 -> 161807
strand +
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGTCTCGGGTTTGCCAAAGGCGGCCAAGTTGATGGAAATGTGACTATTAATGGACTTTTAACCCTCAAAGGTGATTACACTCAAACCGGCGGAATGCAAGTTACTGGTGATATTTACGCTGGCGCAGGAATGAGTGCTTTAGTTTATAGAGCAAGAAATGGTTCATTTTATTCTCGCGCATCTAATGATACATCAAATGCTCATTTTTGGTTTGAAAATACTGACGGTCGTGAACGCGGTGTTTTATATGCCAAACCGCAATTAGCTAATGAAGGTACTATTACTCTTCGTGTTCGTCAAGGCTCTGCCGACGGTGCAGGTAATATAGAGTTCCATTTTATTTCCAGTAATGGTGGTATATTCCAATCTCCTAAAGTTAATGCTACTACATCTATTTCTACGCCGAATTTGACTGTCAATTTAATTAACCATGACGGTAAATCATTTGGTACTTATGATTCACAATCATTGGTTAACTATGTTTATGGTGGAACCGGTGAAACGAATGCGGTCAACTACCTCCGTAAAGTTCGAGCTAAATCCGGCGGTACTATTTTCCACGAATTAGCATCGGCCCAGACAGGTCAATCGGATGAAATTTCTTGGTGGACCGGTTCAACACCATCGTCTAAACAGACAGGTATTCGCAACGATGGGCGTATGATTATACGCAACTCGCTCGCAATAGGTACTATGACCGCCGATTTCCCTTCTAGTGATTATGGTAATGGCGCTGCTTTAGGATATGATACCGCTTATATTGCTCTTGGCGATAATGCAACCGGGATGAGTTGGAAAAAAACCGGCGTATATGATTTAGTTGGTAGTGGTTTATCTGTTGCTTCTATCACTCCTGACAGTTTCCGTAGTACTCGTAAAGGTATATTTGGCCGCTCAGAAGACCAAGGCACTACATGGATTATGCCTGGTACTAATGCTGCATTTTTATCAGTCCAAACTCAAGCGGATGTGAATAACGCAGGGGACGGTCAGACGCATATTGGCTATAACTCTGGTGGAAAAATGTCGCACTATTTCCGCGGTAAAGGCCAAATGAATATTAATACCCAAGAAGGTATGGAAATTAACCCGGGTGTTCTTAAACTAGTAACAGGCGCTAATAATGTAAGGTTTTATGCTGATGGCGGTATTACATCTGTTAAGCGGCTTTCAATATATAACGGCGTATATTTAGCAGCTAATAACTCAACAGCAGGTTTGACTTTTTCAGCAACTACCACGATTGATGGCACCAAACAAATCCTTTGGGAAGGCGGCACTCGAGCAGGCCAGAATAAGAGTTATGTAACTGTTAAAGCATGGGGTAATGCCTTTAACGCATCTGGCGATCATTCCCGTGAAACAGTTTTTGAAGTATCAGATGGACAAGGATATTATTTTTATTCACAGCGTGTGGCTCCAAGTGGCTCTGAAACTACTGGGCCTGTTGTAACCCAGTTCAATGGACAAGTTAATGCTAGAGGAAGTATTATTACTGACGGAAGTTTTAAAGTTAATGGATTAAGCACTTTAGTCGGTAATGTTACTATGTCTAATGGTTTGTTTGTCCAAGGTGGTTCTTCTATTACTGGACAGGTAAAAATTGGTGGAACGGCTGATGCATTAAGAATTTGGAATGCTGAATACGGTGCTATTTTCCGTCGTTCTGAAGATAAGTTTTATATTATTCCAACCCCACAGAATGCGGGTGAATCAGGCGGCATTTCTAATTTACGTCCGTTCTATATTACATTAAGTAATGGTAAAGTTTCCATGGATCATGATGTAGATATCGGCGGCGGTAGATTTAAAGTAGAAGTGGCTGGAACTACTGCTAATCAACGCATAACAGTAAATATGGCATCAGATGCTATTAGAATAAATGCTCCAACACAAGAGTCTTCTAACTTCATTCAAGGACGTAAGGCTGATGTGCCTAAATGGTATTTGGGTATTGGCGATGGCGGCAACGTCGTTCGTATGCACAGCTACACATATTCACATGGTATTGCATTAAATTCTGATTCTGTCGATATTACTAAGCCTTTTAAAGTCGGAAATGCACAATTAGGAACTGACGGTAATATTACCGGTGGTTCAGGAAACTTTGCTAATTTAAACAGTACAATTGAATCATTAAAAACCGATATTGTTTCAAGTTATCCTATTGGAGCTCCTATTCCATGGCCAACGGATACTCCTCCTGACGGTTACGCTATTATGGAAGGCCAGACTTTTGATAAGTCTGCATACCCAAAATTGGCTATGGCTTACCCATCTGGCGTAATTCCAGATATGCGCGGGCAAACTATTAAAGGTAAACCAAGTGGTCGAGCTGTATTAAGCGCAGAAGCCGATGGTGTTAAGGCTCATAGCCATAGTGCATCGGCTTCAAGTACTGACTTGGGTACTAAAACTACATCAAGCTTTGATTATGGTACTAAAACATCTTCAAGCTTTGATTATGGTACTAAGACTAGTAACACCACAGGAAACCATAACCATACAGTGAGTGGTAATACTAGTTCCTCCGGTGCGCACCAACACAACGAAGGGACGTATTTTTCATCGTACGGATACTTTATGAACGGATACAATACTCGCCAGTCATCGGGAGCTGCCATCGAAACATCCAATAGACAAGGCATAGCGTTTTATGGTAAAACCTCTAGTGCTGGTGCCCACACTCATAGTTGGTCAGGAACCACGAGTACTACAGGTAACCATGCTCATACTGTAGGTATAGGTGCTCATACCCATACTGTAGGTATAGGTGCTCATACCCACACGGTAGCAATTGGCTCACATGGTCATACTATCACTGTAAATAGTACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fbb89cccbe1fcc3aedef12a29cfc1cea1ab745e6e0476909aa07fe4553f76c91
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5401
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A quest of great importance - developing a broad spectrum Shigella ssp. and Escherichia coli phage collection Kaczorowska,J., Casey,E., Neve,H., Noben,J.-P., Lugli,G.A., Ventura,M., van Sinderen,D. and Mahony,J. 2019-09-26 — GenBank