Protein

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Genbank accession
USM11577.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSLLAASIAQQKSIQLGGGPAPLLTGFATAVSTGNGAQPPNYANLLFDDIGAYDAAAQSRLTLQNDALVRHVAGNFNGDNSAYMYLDANGGETRIGTAYNRAYVAPNTFAGVNAKGGIHEASAGDYYSVRRNTYSNASSSWQSIEIIDPSLKGCLVGRQTGVTIAGGSMTPYPWDTVVYDTNNFFDPVNPTGFTIPTDGWYRLSCSVYKNTSDYHYGLFHKNGSTDFAGNAYHQEESGYDALNLVTAPVYLLAGDFVELRRIDAQSGTFEGRNFQYMCIELVDPSIQRVLAMAPGGSATSSNPFISWGRREWGPASMFDPAVDPSRLFVPPGCTQARVSTNFSNSWQGRKFEVVTYHEQSGITAAQSCNTGALNIFGPWLPVAPGDSFLIRAYAARSRANVDNASSWWCLECR
Physico‐chemical
properties
protein length:413 AA
molecular weight: 44617,94510 Da
isoelectric point:5,38410
aromaticity:0,11864
hydropathy:-0,24528

Domains

Domains [InterPro]
DC_1950
RBD
11–148
DC_1950 DC_1950 DC_1950
IPR008983
RBD
156–278
IPR008983
IPR008983
RBD
159–264
IPR008983
USM11577.1
1 413
Architecture
RBD
RBD
RBD 11-148 | RBD 153-411 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USM11577.1
1 413
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2634
Central domain 11 202 193 0,0046
C-terminal 203 413 210 0,9947
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-202
C-terminal
203-413

Taxonomy

  Name Taxonomy ID Lineage
Phage Citromicrobium phage vB_CbaS-RXM
[NCBI] 		2909582 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citromicrobium bathyomarinum
[NCBI] 		72174 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Sphingomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USM11577.1 [NCBI]
Genbank nucleotide accession
OL963731.1 [NCBI]
CDS location
range 77311 -> 78552
strand -
CDS
ATGAGCCTCCTCGCGGCCTCGATAGCGCAGCAGAAGAGCATCCAGCTTGGAGGCGGTCCCGCTCCGCTGCTTACAGGATTCGCGACTGCTGTGTCTACGGGGAACGGCGCGCAGCCGCCCAACTACGCGAACTTGCTGTTCGACGACATTGGAGCCTACGACGCAGCCGCTCAATCCCGCTTGACGCTCCAAAACGACGCTCTGGTCCGTCACGTTGCAGGTAACTTCAATGGCGACAACAGCGCCTATATGTATCTGGATGCTAACGGCGGGGAGACGCGAATCGGGACAGCTTACAACCGAGCTTACGTCGCTCCAAACACCTTCGCCGGGGTGAATGCCAAGGGAGGCATCCACGAAGCCTCGGCGGGCGATTATTACAGCGTTCGCCGCAACACCTATTCCAACGCCAGTTCCTCGTGGCAGAGCATCGAAATCATCGACCCTTCTTTGAAGGGGTGCTTGGTCGGTCGGCAAACCGGGGTGACCATCGCGGGCGGGAGTATGACCCCCTACCCGTGGGATACGGTCGTCTACGACACCAACAACTTCTTCGATCCCGTCAACCCTACTGGATTCACGATCCCCACCGATGGATGGTATCGCCTCTCTTGCTCCGTTTACAAGAATACCAGCGACTACCACTATGGTCTCTTCCATAAGAATGGCTCGACTGACTTCGCTGGGAACGCTTACCATCAAGAAGAATCGGGCTACGATGCGCTGAATCTTGTCACCGCTCCGGTATATCTTCTGGCAGGAGACTTTGTAGAACTGCGCCGGATCGACGCCCAATCGGGCACGTTCGAAGGGCGCAACTTCCAGTATATGTGCATCGAGTTGGTGGACCCCTCCATCCAACGAGTGTTGGCTATGGCACCCGGTGGATCGGCCACGAGCAGCAATCCCTTCATCTCGTGGGGGCGGCGTGAGTGGGGACCGGCGTCCATGTTCGATCCCGCTGTTGATCCCAGCCGTCTTTTCGTCCCGCCCGGATGCACACAGGCACGGGTCTCGACGAACTTCTCGAACAGTTGGCAGGGCCGCAAGTTCGAGGTGGTCACCTACCATGAGCAGAGCGGTATCACAGCTGCTCAATCCTGCAACACCGGGGCGTTGAACATCTTCGGCCCTTGGCTTCCGGTCGCACCCGGCGACAGTTTCCTTATCCGCGCATACGCCGCCCGCAGCCGTGCGAATGTCGATAACGCATCCTCGTGGTGGTGCCTCGAATGCCGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7648eb7c521695e7b02f2bb0aeb1c5e9221076895ea6df33763590e8b9d461ae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7715
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A Novel Phage Infecting the Marine Photoheterotrophic Bacterium Citromicrobium bathyomarinum Ma,R., Shao,S., Wei,S., Ye,J., Yang,Y., Jiao,N. and Zhang,R. 2022 35336919 GenBank