Protein

View in Explore
Genbank accession
QNO00556.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MANITKPIGLSNVWADGGTKIDPGASKVNIGWVVQLPPYEYQNWIDNRQDRAIAHFSQHGVPEWDGVTEYQGLLSYAQGSDGIIYKCIQTNVNKDPANPLNDAFWARAFEDYGSVAAVQAQLNDHITNYQSLSGIGNVAGARANLSVYSKVESDVRFAGLNGNSAQVFAVAVATQPEHAVRLGQVNSLLTQATEANLGVVRLATSGVTEAGTDDLRAITPLKAATVYLKKSGNLAGLGNTVTARNNLGLGDIATESQASYAKTANNLSDLASVVSARSNLGLTSTATQPETYFLRTALNLADLTNTVTARANLGLTSLANTPAADVLHRADNLQGLPNVALARSNLGLSDSVIYPSNTWLVRVNNLSDLPNAQAARNNLGLGNLSTRNVFGVPGDLDFTISKTSGGYTNLPNGLIMQWGQGPALGDDQGTTVGLFVAMNVVSVQVTGIGAATNGIGPGFLTQGWTTTSFQVYNNYNSGPSRPFSWLAIGYV
Physico‐chemical
properties
protein length:491 AA
molecular weight: 51734,00640 Da
isoelectric point:5,56644
aromaticity:0,07536
hydropathy:-0,09593

Domains

Domains [InterPro]
DC_0043
STR
1–304
DC_0043 DC_0362
G3DSA:2.60.40.3940
RBD
400–490
G3DSA:2.60.40.3940
IPR054075
RBD
410–490
IPR054075
QNO00556.1
1 491
Architecture
STR
RBD
STR 1-304 | RBD 322-490 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa381
[NCBI] 		1460366 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa381
Host Pseudomonas syringae
[NCBI] 		317 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNO00556.1 [NCBI]
Genbank nucleotide accession
MT670421.1 [NCBI]
CDS location
range 54503 -> 55978
strand +
CDS
ATGGCAAACATTACAAAACCAATTGGCCTGAGCAATGTTTGGGCTGATGGTGGTACGAAGATTGATCCGGGTGCCTCTAAGGTTAACATCGGGTGGGTTGTTCAGCTTCCACCATACGAATATCAAAACTGGATTGACAACCGTCAAGATCGTGCCATTGCTCACTTTAGTCAGCATGGTGTTCCAGAGTGGGATGGTGTTACAGAGTACCAAGGACTTCTGAGCTACGCTCAAGGCTCCGACGGTATCATCTACAAGTGCATCCAAACCAACGTAAACAAAGACCCAGCCAACCCTTTGAACGATGCCTTCTGGGCACGTGCGTTTGAAGACTATGGCTCTGTTGCTGCTGTACAGGCACAGTTGAACGACCACATCACAAACTACCAGTCTCTGTCTGGAATTGGTAACGTTGCTGGCGCCCGAGCTAACTTGTCTGTCTACTCTAAAGTTGAAAGCGATGTAAGATTCGCTGGCTTGAACGGTAACTCTGCTCAAGTGTTTGCTGTTGCTGTTGCAACACAACCAGAACATGCTGTACGTTTGGGGCAAGTTAATAGCTTGCTGACACAGGCTACAGAAGCAAACCTTGGTGTTGTTCGTCTTGCAACCAGCGGTGTAACAGAAGCTGGCACAGACGACCTAAGAGCCATCACTCCATTGAAGGCAGCTACAGTCTACCTCAAGAAGAGCGGAAACCTAGCTGGACTTGGAAACACTGTTACAGCTCGAAACAACCTTGGACTTGGTGATATCGCAACTGAGAGTCAAGCGTCCTACGCTAAGACTGCAAACAACCTGAGCGACCTTGCAAGTGTTGTATCGGCTCGTAGTAACCTTGGACTAACATCCACTGCTACTCAGCCTGAAACATACTTCCTGAGAACTGCTCTAAACCTTGCCGACCTCACAAACACTGTTACTGCAAGAGCAAACCTTGGACTAACATCTTTGGCTAACACTCCTGCTGCTGACGTTCTCCACAGAGCTGACAACTTGCAGGGGCTGCCTAACGTCGCTCTCGCACGTTCCAACCTTGGACTGTCTGACTCTGTTATCTACCCAAGCAACACTTGGCTGGTGAGAGTTAACAACCTGTCTGATCTGCCTAACGCACAAGCTGCACGTAACAACTTGGGACTTGGTAACTTGTCCACACGTAACGTGTTCGGTGTACCGGGTGACTTGGACTTCACAATCTCCAAAACTTCTGGTGGATACACAAATCTACCTAACGGTTTGATTATGCAGTGGGGCCAAGGCCCAGCTCTGGGAGACGACCAAGGAACAACAGTTGGATTGTTTGTGGCGATGAACGTTGTATCTGTGCAAGTTACAGGTATCGGTGCCGCAACTAACGGTATTGGGCCGGGGTTCTTGACTCAAGGCTGGACAACCACAAGCTTCCAAGTTTACAACAACTACAACAGTGGGCCTTCTCGTCCATTCAGTTGGCTAGCAATCGGGTACGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
77f2a1cd620322eeddbbe105d92ad7f71ce22e8fcffefe281038203042df0efc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7576
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank