Protein

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Genbank accession
ATW62254.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTNVYDTSLYPLGSTKPKVVYNNVSNMDEAMNSLTSPWWTDRFGRQRLTWFGMEYEWGNFLQNMGFEPVHLVYVDGSPLVVSRPTQLIDRAGNSYKIKQPATFPVTLTGTWATDLTKLTQVADTSLRTELGTGFRQKLDGSWYMPNDLDLTGVVDESAKVLGYLNTFKRVRLPAGVIKLNIVVPSGCSLTGAGRTKMNRVTKAWVAGGTTILGTIGLTGSKGCTVTNLNIDAYATGVSALAGVSDTTEDHYIAYVNTRSNDHGQLWEQNGSDPGGANGGNIYVTDCDHYDGPNGFVTKMRDVTFVRCFAYDVTVQGHVAVSDNINGPAIYSRAQRTRFIDCGGDGCNIGLSIYSRDAHSASNANGVSGTLDTYWSGTHTNVTAGFIHTGFFLPIDPGTTALFNDQVTIDGGSYFNAPIFGIRFDHAARPRVLRGHFQNCANPIVQGTNCVDLVVEPAVSCFGTINPGILSAYIVESTNAVAINVDIVRELLIFQNTVPTTVATLVTSARVKKMRVLIDDNVTTLAIGGRAMSGKGSVIDLHWSDVIGAWTVGIAGSQLPDSEVPFAYALSLSLFWRSKAASVTMSGNINLLDVSGANVPPGTHVTLRLAASGNFSVFAWSGVTWGTITPVGAITVGQTVLITMYYTGSTFVVTGVNKY
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70670,00200 Da
isoelectric point:6,31006
aromaticity:0,09574
hydropathy:0,02781

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATW62254.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,9929
Central domain 157 520 365 0,9919
C-terminal 521 658 137 0,8291
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-520
C-terminal
521-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Psp6
[NCBI] 		2053693 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATW62254.1 [NCBI]
Genbank nucleotide accession
MG251388 [NCBI]
CDS location
range 272 -> 2248
strand +
CDS
ATGACAAACGTTTACGACACCAGCCTATACCCGCTTGGCTCCACTAAGCCCAAGGTCGTGTACAACAACGTCTCAAACATGGACGAGGCGATGAACTCGCTAACGTCGCCATGGTGGACCGACCGTTTCGGTAGGCAGCGCCTGACGTGGTTCGGCATGGAATACGAATGGGGCAATTTCCTGCAAAACATGGGGTTCGAACCTGTCCACCTTGTATACGTCGACGGCTCGCCGCTGGTGGTGTCGCGTCCAACGCAGTTGATCGACAGGGCCGGCAACAGCTACAAGATCAAACAGCCCGCGACGTTCCCTGTGACCCTAACAGGCACTTGGGCTACCGACCTTACGAAGCTCACCCAGGTGGCCGACACGTCGCTGCGCACTGAGCTTGGCACCGGCTTCAGGCAGAAGCTTGACGGCAGCTGGTACATGCCGAATGACCTGGACTTGACCGGCGTAGTCGATGAGTCTGCCAAAGTGCTTGGCTACCTCAACACCTTCAAGCGCGTGCGGCTGCCAGCGGGCGTGATCAAACTCAACATCGTTGTACCCTCGGGTTGCTCGCTGACCGGTGCAGGTCGCACCAAAATGAACCGAGTCACCAAGGCTTGGGTAGCTGGCGGCACTACCATACTTGGAACCATCGGGCTGACCGGTTCCAAAGGCTGCACCGTAACAAACCTTAACATTGACGCATATGCCACTGGGGTGAGTGCGCTGGCTGGGGTGAGCGACACCACAGAAGACCATTACATTGCGTACGTCAACACCCGTTCGAATGATCACGGGCAGCTGTGGGAACAAAACGGTTCAGACCCTGGTGGTGCTAACGGCGGCAACATCTATGTGACTGATTGCGACCACTACGACGGTCCGAACGGCTTTGTAACCAAGATGCGCGATGTCACTTTTGTGCGCTGCTTTGCGTACGATGTAACCGTGCAAGGCCACGTTGCGGTGTCCGACAACATCAACGGGCCTGCGATCTACAGCCGCGCCCAGCGCACCCGGTTCATTGATTGCGGCGGTGATGGTTGCAACATCGGGCTTTCGATCTACAGCCGCGACGCTCACAGCGCCAGCAACGCCAACGGTGTGTCGGGCACTCTAGATACCTACTGGAGCGGCACGCACACCAACGTGACGGCAGGCTTTATCCACACCGGCTTTTTCCTGCCCATCGACCCTGGCACCACCGCGCTGTTTAACGATCAGGTCACCATCGATGGCGGCAGTTACTTCAACGCCCCGATATTCGGTATCCGATTCGACCATGCTGCTCGCCCGCGTGTATTGCGCGGGCACTTCCAGAACTGCGCGAACCCAATTGTACAGGGCACCAACTGCGTAGATCTGGTGGTTGAACCGGCTGTAAGTTGCTTCGGCACTATCAACCCTGGGATATTGAGTGCGTACATTGTCGAGTCAACGAACGCTGTTGCCATCAACGTCGACATTGTGCGCGAACTGCTGATATTCCAGAACACGGTACCAACCACGGTAGCAACTCTGGTGACTTCGGCCCGCGTCAAGAAAATGCGAGTGCTCATTGACGATAATGTCACGACGCTGGCAATTGGCGGGCGCGCAATGAGCGGCAAAGGTTCGGTAATTGACCTGCACTGGAGCGACGTTATCGGGGCCTGGACGGTAGGTATTGCCGGTAGCCAGCTCCCAGATTCAGAAGTGCCGTTTGCCTACGCGCTGAGCCTTAGCCTGTTCTGGAGGTCCAAGGCAGCTAGCGTGACCATGAGCGGGAACATCAACCTTCTGGACGTATCCGGCGCCAACGTTCCCCCAGGCACCCACGTAACACTGCGGTTGGCGGCGTCGGGCAACTTCAGCGTATTCGCTTGGTCCGGCGTTACCTGGGGTACGATCACCCCAGTGGGTGCTATCACGGTTGGCCAAACGGTATTGATAACCATGTACTACACCGGGTCGACCTTTGTCGTGACCGGCGTCAACAAGTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
79df40935c7804596367cca66b9eb7d7895cf7ee2b909a130f9a8a91232d267b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7109
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparationPatent: RU 2016150928 23-DEC-2016;Gabrichevsky Moscow Research Institute for Epidemiology and Microbiology Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank