Protein

View in Explore
Genbank accession
QHB39016.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSNLPIQFTDKVNSAELLAIMQQFGEHTYVDAELINKLRDALNELHARTADTRIVENTGLEIVGTDIIINELWKWLILSVLYTNNSEITIPITLSTEGKQKLCYLCANQENGFELVYGPESDTNPSAPTIENNLLPVTFFLVTDGTVGTPAEPIVGNVYKKKSESLGYGDPYLSGTNAVIQLRPEGNSRYAFSNPGLISIDGFGLSLISGNPSAEVPYDGKDLFVENTGTTPITLLHDGAGTANSKFFFLDETDLIIPPAGKVCLKYGNSYSELLFKNWDNTKLDKSTTPDSVYTTDASGNQEMIPKSSFRQTFNQSTWSFSDFYYDNLLQPPFIGAAISGGSRTNGTFSDSGSDYTGCHILMSGTTANGGYRFTDTSNPIYTGLRSRKGLTFFGIFKLMSNSDARDRQIRIGFHSSTTSTAQANGVYLEILGSEASFKARDLNVESSSASVTLSSNGISSPGDDYKVLIEYIDNYEVRCKLIDYFGVVVLDVTHTTNVPVNGRRFGCGLTATITTAGANHQIMTIDYMGIGREKPNFLNEF
Physico‐chemical
properties
protein length:542 AA
molecular weight: 59269,53290 Da
isoelectric point:4,80366
aromaticity:0,10148
hydropathy:-0,22196

Domains

Domains [InterPro]
IPR053978
STR
355–527
IPR053978
QHB39016.1
1 542
Architecture
STR
STR 355-527 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHB39016.1
1 542
Domain Start End Length (AA) Confidence
N-terminal 1 258 258 0,5791
Central domain 259 457 200 0,0330
C-terminal 458 542 84 0,9977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-258
Central
259-457
C-terminal
458-542

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage vB_FspS_laban6-1
[NCBI] 		2686250 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium sp. LMO6
[NCBI] 		2654243 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Flavobacterium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHB39016.1 [NCBI]
Genbank nucleotide accession
MN812211 [NCBI]
CDS location
range 34136 -> 35764
strand -
CDS
ATGAGTAATTTACCCATTCAATTTACAGATAAAGTAAACTCAGCCGAACTTCTTGCAATCATGCAACAATTTGGAGAACATACTTATGTGGATGCAGAATTAATTAATAAATTGCGTGATGCTCTAAACGAGCTTCATGCTAGAACTGCTGATACTCGTATTGTAGAAAATACAGGATTAGAAATAGTCGGCACAGATATAATCATAAACGAATTATGGAAGTGGTTAATATTAAGTGTCTTATATACAAACAATTCCGAAATAACAATTCCAATAACACTATCAACTGAAGGAAAACAAAAGCTTTGTTATTTATGTGCTAATCAAGAAAATGGATTTGAATTAGTCTATGGTCCTGAATCAGATACTAATCCATCAGCACCAACAATAGAAAACAATCTTCTTCCAGTAACGTTCTTTTTAGTTACCGATGGAACTGTAGGAACTCCAGCAGAACCAATCGTAGGCAATGTTTATAAAAAGAAATCGGAATCATTAGGCTATGGTGATCCTTATCTATCAGGAACAAACGCAGTCATTCAATTACGCCCTGAAGGTAATAGTCGTTATGCTTTTTCTAATCCTGGGTTGATTTCAATAGATGGTTTTGGTCTGTCTTTAATTTCTGGAAATCCAAGTGCTGAAGTTCCTTATGATGGAAAAGATTTATTTGTTGAAAATACAGGAACAACACCAATTACTTTATTGCATGATGGAGCAGGAACCGCTAATTCTAAGTTTTTCTTTTTAGATGAAACCGATTTAATTATACCTCCAGCTGGTAAAGTTTGTTTGAAATATGGTAATTCTTATAGCGAGCTTTTATTTAAGAATTGGGATAACACCAAACTCGACAAATCCACTACACCTGACAGCGTTTACACTACTGATGCTTCAGGAAATCAAGAAATGATTCCAAAGAGTAGTTTTAGGCAAACATTCAATCAATCAACGTGGAGTTTTTCTGATTTTTATTATGATAATTTACTTCAACCTCCATTTATAGGTGCTGCTATATCAGGAGGAAGTCGGACAAATGGTACATTTTCAGATAGTGGAAGTGATTATACAGGTTGTCATATACTAATGTCAGGAACGACTGCGAATGGTGGGTATCGATTTACTGATACATCTAATCCGATTTATACAGGACTACGATCAAGAAAAGGACTAACATTCTTTGGGATTTTTAAATTAATGTCAAATTCTGATGCAAGAGATAGACAAATTCGTATTGGCTTTCATTCTTCTACGACATCTACTGCTCAAGCAAATGGAGTTTATTTAGAAATATTAGGTAGCGAAGCATCGTTTAAAGCAAGAGACCTCAATGTAGAGAGTTCAAGTGCATCAGTAACATTAAGCAGTAATGGTATTTCAAGTCCAGGAGATGATTACAAAGTATTAATTGAGTATATAGATAATTATGAAGTTAGATGTAAGCTAATAGATTATTTTGGCGTAGTCGTACTTGATGTTACACATACTACTAATGTACCTGTAAATGGTCGAAGATTTGGATGTGGATTAACAGCTACTATAACAACAGCGGGAGCGAATCACCAAATTATGACTATTGACTATATGGGAATTGGACGTGAAAAACCTAACTTTTTAAATGAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
78c01f5abf65e63f83a1b16b04cc96ae98a86015c20310e36b45e8b4da75f55b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6601
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diversity and Host Interactions Among Virulent and Temperate Baltic Sea Flavobacterium Phages Nilsson,E., Bayfield,O.W., Lundin,D., Antson,A.A. and Holmfeldt,K. 2020 — GenBank