Protein

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Genbank accession
XWX33284.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDIPGTESEWLESLNIDVEVAKDYTDSKLISIDDKIAYARTRSFRDIKIHADLPAVFEGYQALLEGTSSNHIYPQGLAVDSDYLYVLYSYDDKSPGKEKILIVYARKDGYRQHSMYTLSNVASESIEIEYTYYGRYLYAKSGTDQLGKYDLSDLTGIPNTPTRLEPMQTYDIPVLYQFARFKNGWIFELANNSKGYYNQRDTFGLYNKNLSEKTSYFTTHASIGNLWSNSLTTKSSKRQGLTVFNNNILQAVGGNYNVGDDVGTYHLQGIQELSPSGEIINDYTYDPNELADFLGSQGKDVNRIEHEGLYTDKEYDKNNVYSIIIYNTTISREDSNENGLLFVEYRPYEPDHTFKQLGKPFLTSNSLYNPYKKVVSNKLVNDYTGKSIDSLKELALYMIDSYQDKVVFYSSWVDILDLSNVKIENGIKVTLENLDNKVFYLSYEDNFGVVKKKLTVNKSQETITIIDTRKEKSITGTDLLTLDYNTSFYSIGSVNSPSGVHVNGFVKCYVSDNNRILTYEPFNSNDTFKNIYNSGSWKGWKNSNVNIDTIVAQKHVITQDNGDRLRVSDVDPITLNTGYYQIWKMKNSPVGFDSNAQYWNVDIITAQDNVKQIKATLSATGQEYTRTIHKGNDLGWKFINNEKYGRNDFKLYTIPLMAPFNTANLSVMENNHIVTVRLQGKANSNTNNISDLDVVIGKLPAHIEYPKDFVRCTISSMTKGETEQFIGNLVIDTKGIITVKFNRSGTF
Physico‐chemical
properties
protein length:747 AA
molecular weight: 84997,87480 Da
isoelectric point:5,48868
aromaticity:0,11914
hydropathy:-0,51673

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX33284.1
1 747
Domain Start End Length (AA) Confidence
N-terminal 1 129 129 0,5205
Central domain 130 457 329 0,5974
C-terminal 458 747 289 0,5370
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-129
Central
130-457
C-terminal
458-747

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_40
[NCBI] 		2815627 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus vitulinus
[NCBI] 		71237 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX33284.1 [NCBI]
Genbank nucleotide accession
MZ417333 [NCBI]
CDS location
range 5040 -> 7283
strand -
CDS
ATGGATATACCTGGAACAGAGAGTGAGTGGCTAGAAAGTCTTAACATTGATGTTGAAGTTGCTAAGGACTACACTGACTCAAAGCTAATTAGCATAGATGATAAAATAGCTTATGCTAGGACACGTTCTTTCAGAGATATTAAGATACACGCAGATTTACCGGCAGTATTTGAAGGATATCAAGCGTTATTAGAGGGGACTAGTTCAAACCATATTTATCCCCAGGGATTAGCAGTGGATAGTGATTATCTATACGTTTTATATTCCTATGATGATAAATCACCGGGCAAAGAAAAAATACTTATAGTGTATGCTAGAAAAGATGGATATAGACAACATTCTATGTATACTTTATCTAACGTAGCATCAGAGAGTATAGAAATTGAGTACACTTATTATGGTAGGTATTTGTATGCTAAAAGTGGTACAGACCAATTAGGTAAATACGATTTATCAGACTTGACGGGAATACCTAATACACCTACAAGATTAGAGCCAATGCAAACATATGACATACCGGTATTATATCAGTTTGCTAGATTTAAAAATGGTTGGATTTTTGAATTAGCTAATAACTCAAAAGGTTATTATAATCAAAGAGATACATTTGGACTTTATAATAAAAACCTTTCTGAAAAAACAAGTTACTTTACAACTCACGCATCTATAGGTAACCTATGGTCTAATTCACTAACTACTAAATCATCTAAAAGACAAGGATTAACAGTATTCAATAATAATATTCTACAGGCAGTAGGGGGTAATTATAACGTAGGAGATGATGTAGGTACCTATCACTTACAAGGAATACAAGAACTAAGTCCTAGTGGTGAAATAATAAATGATTATACTTATGACCCTAATGAGTTAGCCGATTTCCTTGGGTCACAAGGAAAAGATGTAAATAGAATTGAGCACGAGGGATTATATACAGATAAAGAGTATGATAAAAATAACGTATACTCAATTATAATATATAATACTACCATATCAAGAGAGGATTCAAATGAAAATGGTTTGTTATTTGTAGAATATAGACCTTATGAGCCAGACCATACATTTAAGCAACTAGGTAAGCCTTTCTTAACAAGTAATAGTTTATATAACCCTTACAAAAAGGTTGTAAGCAATAAATTAGTAAATGATTATACAGGTAAATCTATTGATAGTCTAAAAGAGTTAGCATTGTATATGATTGACTCATATCAAGATAAAGTGGTATTTTACTCTAGTTGGGTAGACATATTAGATTTAAGTAATGTTAAGATTGAAAATGGTATAAAAGTTACTTTGGAGAATTTAGATAATAAAGTTTTCTACTTATCATATGAAGATAACTTTGGTGTTGTTAAGAAAAAATTAACGGTTAATAAATCACAAGAAACAATAACAATAATAGATACTAGAAAAGAAAAATCTATAACTGGTACTGATTTACTAACATTAGATTATAATACATCATTCTATAGTATAGGTAGTGTTAACTCACCTAGTGGTGTACACGTAAATGGATTTGTCAAGTGTTATGTAAGTGACAATAATAGAATTTTAACTTATGAACCTTTTAATAGTAACGATACTTTTAAGAACATTTATAATTCCGGTTCTTGGAAAGGTTGGAAAAATTCAAATGTTAATATAGATACGATAGTAGCTCAAAAGCACGTCATTACTCAAGATAATGGAGATAGATTAAGAGTATCAGATGTAGACCCTATAACATTGAATACAGGATATTATCAAATATGGAAAATGAAAAACTCACCTGTTGGTTTTGATAGTAATGCTCAATATTGGAACGTAGATATCATAACAGCACAAGATAATGTAAAACAAATAAAAGCTACATTAAGTGCAACCGGTCAAGAGTATACAAGAACCATTCATAAGGGTAATGACTTAGGTTGGAAGTTTATAAACAATGAAAAGTATGGTAGAAATGATTTTAAACTGTACACAATTCCCCTTATGGCACCTTTTAACACTGCTAACTTATCAGTAATGGAAAATAATCATATAGTAACCGTTAGACTACAAGGTAAAGCTAATTCAAATACTAATAATATTTCAGATTTAGATGTTGTAATAGGTAAATTACCCGCACATATAGAGTACCCTAAAGATTTTGTTAGGTGTACAATATCTAGTATGACAAAAGGTGAAACAGAGCAATTCATAGGCAACCTAGTGATAGACACTAAAGGTATTATAACTGTTAAATTTAATAGGTCAGGTACTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7cbc3fa2d521569d8be3eb6da0e57313a5b8d50436884162e8d9a9695a62eaa4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7980
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank