Protein

View in Explore
Genbank accession
YP_009822199.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,64
TF
Evidence RBPdetect2
Probability 0,57
Protein sequence
MAFPINPNPGDTYTDEYGTVWVYAGPINGWYRQTVIPVNDTTYIGSDGAPGGIGNNTEVVFNDNGSLASDSGLTYNKTTDALSGGAFVPTGSTVPSNGVYRPSANNVAISTNGTGRLFVDSSGNVGAGLSNQSSYYADWNQLVVGAASGSKGITIATGSSDAGTLAFADGTSLTDRYRGYIQYAHGTDSLAFATGATERLRITSDGKLGLGTSSPVAKLDVNGSIRFADSGIVGPIDLGLNDTTQSYYFGLSRLNALAARFNGMKVYNNANGASGQAASRIGFFTDISGVIASTERLTITEDGKVGIGTATPGRLLQVSNTSTSPFISILGAASNDGGLLFGDNASDGSGQIRYEHSVDAMYFVTALSERARIDSSGRLLVGTSSSNGINDDLLQVITNVGVTRYAASTGGAFLNLSKSRSATTGTNSLLSSGDALGTIQFNGADGSSWPTAALIKAEVDATPGVGDMPGRLVFSTTADGASSPTERMRIGSNGKATFTLAGGSLSIGGGTEPSIYRDSSGMSGLHFSNGNILPTDGAGTVSDNTIGWGAASYRWSVIYAATGTINTSDVNLKQDIESLNAAELSVASAIKTLIRKFRFTNAVADKGDDARIHVGVIAQEVEQAFVSAGLDPRRYGLFCEDELEDGTKRLGIRYDELLAFVIAAL
Physico‐chemical
properties
protein length:665 AA
molecular weight: 68665,80770 Da
isoelectric point:4,75671
aromaticity:0,07970
hydropathy:-0,09805

Domains

Domains [InterPro]
DC_1386
STR
12–250
DC_1386 IPR036388
DC_0783
STR
220–654
DC_0783
cd10144
CHP
568–665
cd10144
IPR030392
CHP
568–629
IPR030392
IPR030392
CHP
568–665
IPR030392
YP_009822199.1
1 665
Architecture
STR
CHP
STR 12-654 | CHP 655-665
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009822199.1
1 665
Domain Start End Length (AA) Confidence
N-terminal 1 165 165 0,3744
Central domain 166 364 200 0,1731
C-terminal 365 665 300 0,9414
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-165
Central
166-364
C-terminal
365-665

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBP4
[NCBI] 		754059 Uroviricota > Caudoviricetes > Autographivirales > Poseidonvirus > Poseidonvirus SCBP4
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009822199.1 [NCBI]
Genbank nucleotide accession
NC_048183.1 [NCBI]
CDS location
range 7185 -> 9182
strand -
CDS
ATGGCATTTCCAATTAACCCCAACCCAGGGGATACTTATACAGATGAATACGGAACAGTATGGGTCTATGCTGGTCCTATCAATGGGTGGTACAGACAAACTGTTATTCCTGTTAATGATACTACCTATATTGGTAGTGATGGAGCGCCTGGTGGTATTGGTAATAACACTGAGGTTGTCTTCAATGATAATGGTTCGCTAGCAAGTGATAGTGGACTTACATATAATAAAACAACAGATGCTTTGAGTGGTGGAGCATTTGTACCGACTGGTAGTACAGTACCAAGTAATGGTGTCTATAGGCCGTCTGCAAACAACGTAGCCATCTCGACTAATGGCACTGGGCGGTTGTTTGTTGACAGTAGTGGGAATGTTGGCGCCGGGCTTTCGAATCAATCAAGCTACTACGCAGACTGGAATCAACTTGTTGTCGGCGCTGCATCGGGATCTAAAGGTATCACTATTGCAACTGGCAGCTCAGATGCAGGAACCCTGGCATTTGCTGACGGAACAAGTCTTACAGATCGTTATCGCGGCTACATTCAATACGCTCACGGAACTGACTCTTTAGCTTTTGCTACTGGCGCCACCGAACGCCTCCGCATCACATCGGACGGGAAGCTGGGTCTGGGGACTAGTAGCCCTGTGGCCAAACTAGACGTTAATGGAAGTATTCGTTTTGCGGATTCAGGAATTGTAGGTCCTATAGATTTAGGGCTAAATGACACAACTCAGTCTTATTATTTTGGGCTAAGCCGCCTTAATGCTCTTGCCGCTCGCTTCAATGGCATGAAGGTATACAACAATGCCAATGGAGCAAGCGGACAGGCAGCATCAAGAATTGGATTCTTTACTGACATAAGCGGAGTTATTGCTTCAACGGAAAGGTTGACTATTACAGAAGACGGCAAAGTAGGGATTGGCACTGCGACGCCTGGCAGGTTATTACAAGTAAGCAATACATCCACCAGTCCATTTATTTCAATTCTTGGAGCTGCAAGCAACGACGGCGGTCTACTTTTTGGTGATAACGCCAGTGACGGATCTGGACAAATCAGATACGAGCACAGCGTGGATGCGATGTATTTCGTCACCGCCCTTTCCGAACGCGCCCGCATCGACAGCTCCGGCAGGTTGTTAGTTGGCACGTCTTCGAGCAATGGGATTAATGATGACCTGCTTCAGGTAATTACCAACGTTGGTGTCACTCGCTACGCAGCTTCCACTGGCGGAGCATTTCTAAATCTAAGCAAATCAAGAAGTGCCACAACAGGAACTAATAGCCTTCTTAGCAGTGGCGATGCCCTCGGGACCATTCAATTTAATGGCGCAGACGGTTCTTCTTGGCCAACCGCTGCGTTAATTAAAGCCGAAGTCGATGCCACCCCTGGCGTTGGTGACATGCCGGGCCGTTTAGTGTTCTCCACTACCGCCGACGGAGCGAGCAGCCCGACGGAGCGGATGAGGATTGGGAGTAATGGCAAAGCCACGTTTACGCTGGCAGGCGGCAGCCTCAGTATTGGTGGTGGGACTGAACCATCAATCTATCGAGATTCTTCAGGAATGTCTGGCCTGCATTTTAGCAACGGAAATATCCTACCAACTGACGGAGCTGGGACAGTTTCGGATAATACAATTGGTTGGGGAGCAGCAAGTTATAGGTGGTCCGTTATTTATGCCGCGACAGGTACAATCAACACCTCTGACGTAAATTTGAAGCAAGACATTGAAAGTCTCAATGCGGCAGAGCTTTCAGTCGCATCAGCAATTAAAACATTGATCAGAAAGTTTAGATTTACGAATGCCGTTGCCGATAAAGGTGACGATGCTCGTATTCACGTTGGCGTGATTGCCCAAGAAGTTGAGCAGGCTTTTGTAAGCGCTGGGCTTGATCCGCGCCGTTACGGATTGTTCTGCGAAGACGAGCTAGAGGATGGCACCAAGCGGCTTGGTATTCGATATGACGAACTCCTGGCGTTTGTCATTGCTGCGCTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a787621fb4315eef6f2de967f91867e3b39348adb5c121c9f3a976dc6079c8df
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7027
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CBP4 Henn,M.R., Chen,F., Wang,K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank